Dynamic properties of the N-terminal swapped dimer of ribonuclease A. (Q40278375)

19 September 2017

Dynamic properties of the N-terminal swapped dimer of ribonuclease A. (English)

1 reference

19 September 2017

Antonello Merlino

1

1 reference

19 September 2017

Luigi Vitagliano

series ordinal

2

1 reference

19 September 2017

Marc Antoine Ceruso

series ordinal

3

1 reference

19 September 2017

Lelio Mazzarella

series ordinal

4

1 reference

19 September 2017

language of work or name

English

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publication date

1 April 2004

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19 September 2017

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19 September 2017

86

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19 September 2017

4

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19 September 2017

2383-2391

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Molecular dynamics simulation of dimeric and monomeric forms of human prion protein: insight into dynamics and properties

19 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304087

The unfolding story of three-dimensional domain swapping.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304087

Selective excitation of native fluctuations during thermal unfolding simulations: horse heart cytochrome c as a case study

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304087

Molecular dynamics simulation of the SH3 domain aggregation suggests a generic amyloidogenesis mechanism

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304087

3D domain swapping: as domains continue to swap

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304087

Atomic resolution structures of ribonuclease A at six pH values

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304087

Reversible substrate-induced domain motions in ribonuclease A

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304087

The structure of an engineered domain-swapped ribonuclease dimer and its implications for the evolution of proteins toward oligomerization

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304087

A domain-swapped RNase A dimer with implications for amyloid formation

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304087

Productive and nonproductive binding to ribonuclease A: X-ray structure of two complexes with uridylyl(2′,5′)guanosine

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304087

Proteins with similar architecture exhibit similar large-scale dynamic behavior

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304087

A potential allosteric subsite generated by domain swapping in bovine seminal ribonuclease

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304087

Protein titration in the crystal state.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304087

Glutamine repeats and neurodegenerative diseases: molecular aspects

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304087

Binding of a substrate analog to a domain swapping protein: X-ray structure of the complex of bovine seminal ribonuclease with uridylyl(2′,5′)adenosine

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304087

The crystal structure of a 3D domain-swapped dimer of RNase A at a 2.1-A resolution

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304087

Ionic interactions in crystalline bovine pancreatic ribonuclease A

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304087

3D domain swapping: a mechanism for oligomer assembly

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304087

High-resolution three-dimensional structure of ribonuclease A in solution by nuclear magnetic resonance spectroscopy

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304087

Essential dynamics of proteins

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304087

The structures of RNase A complexed with 3'-CMP and d(CpA): active site conformation and conserved water molecules

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304087

Swapping structural determinants of ribonucleases: an energetic analysis of the hinge peptide 16-22.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304087

Active site of RNase: neutron diffraction study of a complex with uridine vanadate, a transition-state analog

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304087

Active site dynamics of ribonuclease

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304087

Structure of phosphate-free ribonuclease A refined at 1.26 .ANG

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304087

The dual-mode quaternary structure of seminal RNase

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304087

Mechanics and dynamics of B1 domain of protein G: role of packing and surface hydrophobic residues

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304087

Oligomer formation by 3D domain swapping: a model for protein assembly and misassembly

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304087

The antitumor action of seminal ribonuclease and its quaternary conformations.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304087

Global and local motions in ribonuclease A: a molecular dynamics study.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304087

Different susceptibility of the two dimers of ribonuclease A to subtilisin. Implications for their structure.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304087

A proposed structural model for amyloid fibril elongation: domain swapping forms an interdigitating beta-structure polymer

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304087

Characterization of the unfolding pathway of the cell-cycle protein p13suc1 by molecular dynamics simulations: implications for domain swapping

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304087

Effects of core-packing on the structure, function, and mechanics of a four-helix-bundle protein ROP.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304087

On the convergence of the conformational coordinates basis set obtained by the essential dynamics analysis of proteins' molecular dynamics simulations.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1304087

Dynamic effects of mutations within two loops of cytochrome c551 from Pseudomonas aeruginosa

20 August 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974295-2

Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974295-2

Bovine seminal ribonuclease: structure at 1.9 A resolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974295-2

Subtle functional collective motions in pancreatic-like ribonucleases: from ribonuclease A to angiogenin

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974295-2

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974295-2

Characterization of substrate UpA binding to RNase A--computer modelling and energetics approach

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974295-2

Relationships between nonhyperbolic kinetics and dimeric structure in ribonucleases

7 January 2021

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15041676

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

On the aggregation of bovine pancreatic ribonuclease

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15041676

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/S0006-3495(04)74295-2

1 reference

19 September 2017

1 reference

19 September 2017

PubMed publication ID

15041676

1 reference