Molecular dynamics simulation of the SH3 domain aggregation suggests a generic amyloidogenesis mechanism (Q30165046)

9 June 2017

Molecular dynamics simulation of the SH3 domain aggregation suggests a generic amyloidogenesis mechanism (English)

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molecular dynamics simulation

9 June 2017

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Feng Ding

1

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Nikolay V. Dokholyan

Nikolay V Dokholyan

2

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Sergey V. Buldyrev

Sergey V Buldyrev

3

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H. Eugene Stanley

4

H Eugene Stanley

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PubMed ID

12460582

9 June 2017

Eugene I. Shakhnovich

5

Eugene I Shakhnovich

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PubMed ID

12460582

9 June 2017

language of work or name

English

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publication date

1 December 2002

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Journal of Molecular Biology

9 June 2017

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9 June 2017

324

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9 June 2017

851-857

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9 June 2017

4

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The alternative conformations of amyloidogenic proteins and their multi-step assembly pathways

9 June 2017

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901112-9

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901112-9

Characterization of the Amyloid Fibril as a Cross- Protein

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901112-9

X-ray diffraction studies on amyloid filaments

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901112-9

Common core structure of amyloid fibrils by synchrotron X-ray diffraction.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901112-9

Amyloid fibril formation by an SH3 domain

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901112-9

Designing conditions for in vitro formation of amyloid protofilaments and fibrils

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901112-9

Protein misfolding, evolution and disease

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901112-9

Mapping the core of the beta(2)-microglobulin amyloid fibril by H/D exchange

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901112-9

Assembling amyloid fibrils from designed structures containing a significant amyloid beta-peptide fragment

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901112-9

Domain swapping: entangling alliances between proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901112-9

A domain-swapped RNase A dimer with implications for amyloid formation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901112-9

Human cystatin C, an amyloidogenic protein, dimerizes through three-dimensional domain swapping

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901112-9

A proposed structural model for amyloid fibril elongation: domain swapping forms an interdigitating beta-structure polymer.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901112-9

Three-dimensional domain swapping in the folded and molten-globule states of cystatins, an amyloid-forming structural superfamily

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901112-9

Folding thermodynamics of a model three-helix-bundle protein.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901112-9

Discrete molecular dynamics studies of the folding of a protein-like model.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901112-9

Identifying the protein folding nucleus using molecular dynamics.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901112-9

Thermodynamics and folding kinetics analysis of the SH3 domain form discrete molecular dynamics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901112-9

Important role of hydrogen bonds in the structurally polarized transition state for folding of the src SH3 domain

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901112-9

Obligatory steps in protein folding and the conformational diversity of the transition state

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901112-9

Direct molecular dynamics observation of protein folding transition state ensemble

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901112-9

Dependence on solution conditions of aggregation and amyloid formation by an SH3 domain

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901112-9

Folding kinetics of the SH3 domain of PI3 kinase by real-time NMR combined with optical spectroscopy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901112-9

Folding dynamics of the src SH3 domain

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901112-9

Anatomy of protein structures: visualizing how a one-dimensional protein chain folds into a three-dimensional shape

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901112-9

Evidence for the role of PrP(C) helix 1 in the hydrophilic seeding of prion aggregates

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901112-9

The classification and origins of protein folding patterns

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901112-9

A structural census of the current population of protein sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901112-9

Theoretical Studies of Protein Folding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901112-9

Topological and energetic factors: what determines the structural details of the transition state ensemble and "en-route" intermediates for protein folding? An investigation for small globular proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901112-9

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901112-9

10.1016/S0022-2836(02)01112-9

7 January 2021

Identifiers

DOI

1 reference

9 June 2017

1 reference

PubMed ID

12460582