Transcriptome-wide RNA processing kinetics revealed using extremely short 4tU labeling. (Q40199664)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26679539%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

title

Transcriptome-wide RNA processing kinetics revealed using extremely short 4tU labeling (English)

1 reference

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2 March 2020

0 references

4

1 reference

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2 March 2020

Sander Granneman

7

1 reference

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2 March 2020

David Barrass

1

1 reference

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2 March 2020

Jane E A Reid

2

1 reference

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2 March 2020

Yuanhua Huang

3

1 reference

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2 March 2020

6

Jean D Beggs

1 reference

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2 March 2020

author name string

Guido Sanguinetti

5

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2 March 2020

publication date

17 December 2015

1 reference

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2 March 2020

1 reference

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2 March 2020

volume

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26679539%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

issue

1

1 reference

28 June 2019

page(s)

282

1 reference

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Creative Commons Attribution 4.0 International

2 March 2020

copyright license

start time

1 December 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

DESeq2

object named as

DESeq2

DESeq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

DESeq2

0 references

exact match

https://scigraph.springernature.com/pub.10.1186/s13059-015-0848-1

0 references

cites work

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Nucleotide sequence composition adjacent to intronic splice sites improves splicing efficiency via its effect on pre-mRNA local folding in fungi

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22 September 2017

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22 September 2017

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PAR-CLIP data indicate that Nrd1-Nab3-dependent transcription termination regulates expression of hundreds of protein coding genes in yeast

22 September 2017

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Dealing with pervasive transcription.

22 September 2017

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22 September 2017

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4-thiouridine inhibits rRNA synthesis and causes a nucleolar stress response

22 September 2017

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Lariat sequencing in a unicellular yeast identifies regulated alternative splicing of exons that are evolutionarily conserved with humans

22 September 2017

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22 September 2017

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Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs

22 September 2017

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22 September 2017

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Ultrashort and progressive 4sU-tagging reveals key characteristics of RNA processing at nucleotide resolution

22 September 2017

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22 September 2017

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Spliceosome Structure and Function

22 September 2017

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Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast

22 September 2017

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Analysis and design of RNA sequencing experiments for identifying isoform regulation

22 September 2017

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RiboSys, a high-resolution, quantitative approach to measure the in vivo kinetics of pre-mRNA splicing and 3'-end processing in Saccharomyces cerevisiae.

22 September 2017

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The differential interaction of snRNPs with pre-mRNA reveals splicing kinetics in living cells

22 September 2017

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Rates of in situ transcription and splicing in large human genes

22 September 2017

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Bidirectional promoters generate pervasive transcription in yeast

22 September 2017

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Correlation between the secondary structure of pre-mRNA introns and the efficiency of splicing in Saccharomyces cerevisiae.

22 September 2017

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22 September 2017

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22 September 2017

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Direct sorting of the yeast uracil permease to the endosomal system is controlled by uracil binding and Rsp5p-dependent ubiquitylation.

22 September 2017

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RNA-binding protein Nrd1 directs poly(A)-independent 3'-end formation of RNA polymerase II transcripts

22 September 2017

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22 September 2017

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22 September 2017

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Seven novel methylation guide small nucleolar RNAs are processed from a common polycistronic transcript by Rat1p and RNase III in yeast.

22 September 2017

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The putative nucleic acid helicase Sen1p is required for formation and stability of termini and for maximal rates of synthesis and levels of accumulation of small nucleolar RNAs in Saccharomyces cerevisiae

22 September 2017

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The ORF YBL042 of Saccharomyces cerevisiae encodes a uridine permease

22 September 2017

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Snapshots of pre-rRNA structural flexibility reveal eukaryotic 40S assembly dynamics at nucleotide resolution

22 September 2017

1 reference

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LaSSO, a strategy for genome-wide mapping of intronic lariats and branch points using RNA-seq

17 June 2018

1 reference

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High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay

17 June 2018

1 reference

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Deciphering 3'ss selection in the yeast genome reveals an RNA thermosensor that mediates alternative splicing

17 June 2018

1 reference

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XUTs are a class of Xrn1-sensitive antisense regulatory non-coding RNA in yeast.

20 August 2018

1 reference

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Biosynthetic labeling of RNA with uracil phosphoribosyltransferase allows cell-specific microarray analysis of mRNA synthesis and decay

20 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26679539

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Splice site choice and splicing efficiency are positively influenced by pre-mRNA intramolecular base pairing in yeast

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26679539

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S13059-015-0848-1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26679539%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

2 March 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26679539%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26679539%20AND%20SRC:MED&resulttype=core&format=json