Determination of in vivo RNA kinetics using RATE-seq (Q34240903)

31 July 2017

Determination of in vivo RNA kinetics using RATE-seq (English)

1 reference

31 July 2017

Benjamin Neymotin

1

1 reference

31 July 2017

Rodoniki Athanasiadou

series ordinal

2

1 reference

31 July 2017

David Gresham

series ordinal

3

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31 July 2017

language of work or name

English

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publication date

26 August 2014

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31 July 2017

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31 July 2017

20

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31 July 2017

1645-1652

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31 July 2017

10

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describes a project that uses

31 July 2017

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC4174445/fullTextXML

inferred from PubMed Central ID database lookup

cites work

Comparative dynamic transcriptome analysis (cDTA) reveals mutual feedback between mRNA synthesis and degradation

1 reference

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Single-molecule mRNA decay measurements reveal promoter- regulated mRNA stability in yeast

6 July 2018

1 reference

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Dynamic profiling of mRNA turnover reveals gene-specific and system-wide regulation of mRNA decay

6 July 2018

1 reference

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Global quantification of mammalian gene expression control

6 July 2018

1 reference

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Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast

6 July 2018

1 reference

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A complete set of nascent transcription rates for yeast genes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174445

System-level analysis of genes and functions affecting survival during nutrient starvation in Saccharomyces cerevisiae

6 July 2018

1 reference

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Major role for mRNA stability in shaping the kinetics of gene induction

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174445

Transcriptome analysis by strand-specific sequencing of complementary DNA.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174445

Quantification of the yeast transcriptome by single-molecule sequencing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174445

TU-tagging: cell type-specific RNA isolation from intact complex tissues

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174445

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174445

Single-RNA counting reveals alternative modes of gene expression in yeast

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174445

High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174445

The maternal-zygotic transition: death and birth of RNAs

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174445

Genomic run-on evaluates transcription rates for all yeast genes and identifies gene regulatory mechanisms

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174445

Genome-wide analysis of mRNA stability using transcription inhibitors and microarrays reveals posttranscriptional control of ribosome biogenesis factors

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174445

Precision and functional specificity in mRNA decay

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174445

Genomic expression programs in the response of yeast cells to environmental changes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174445

Chinese Hamster Polyadenylated Messenger Ribonucleic Acid: Relationship to Non-Polyadenylated Sequences and Relative Conservation During Messenger Ribonucleic Acid Processing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174445

High Stability of Messenger RNA in Growing Cultured Cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174445

Polyadenylation of maternal RNA of sea urchin eggs after fertilization

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174445

Eucaryotic RNA polymerase conditional mutant that rapidly ceases mRNA synthesis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174445

Re-utilization of pyrimidine nucleotides during rat liver regeneration

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174445

Short-lived messenger RNA in HeLa cells and its impace on the kinetics of accumulation of cytoplasmic polyadenylate

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174445

Transient transcriptional responses to stress are generated by opposing effects of mRNA production and degradation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174445

RNA analysis by biosynthetic tagging using 4-thiouracil and uracil phosphoribosyltransferase

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174445

Messenger RNA for ribosomal proteins in yeast

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25161313

12 December 2020

inferred from PubMed ID database lookup

Biosynthetic labeling of RNA with uracil phosphoribosyltransferase allows cell-specific microarray analysis of mRNA synthesis and decay

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25161313

12 December 2020

inferred from PubMed ID database lookup

Promoter elements regulate cytoplasmic mRNA decay

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25161313

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1261/RNA.045104.114

1 reference

release_jayhjgxedraqdfkirr3cvfy7qa

31 July 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/jayhjgxedraqdfkirr3cvfy7qa

24 November 2022

mapped directly with Wikidata item

PMCID

4174445

1 reference

31 July 2017

1 reference