Identification of a Conserved RNA-dependent RNA Polymerase (RdRp)-RNA Interface Required for Flaviviral Replication (Q40100122)

17 September 2017

Identification of a Conserved RNA-dependent RNA Polymerase (RdRp)-RNA Interface Required for Flaviviral Replication (English)

1 reference

17 September 2017

0 references

1 reference

dengue virus protein NS5

1 reference

inferred from abstract

viral genome replication

1 reference

inferred from abstract

author name string

Kenneth Hodge

1

1 reference

17 September 2017

Chairat Tunghirun

2

1 reference

17 September 2017

Maliwan Kamkaew

3

1 reference

17 September 2017

Thawornchai Limjindaporn

4

1 reference

17 September 2017

Pa-Thai Yenchitsomanus

5

1 reference

17 September 2017

Sarin Chimnaronk

6

1 reference

17 September 2017

language of work or name

English

0 references

publication date

22 June 2016

1 reference

Journal of Biological Chemistry

17 September 2017

1 reference

17 September 2017

291

1 reference

17 September 2017

33

1 reference

17 September 2017

17437-17449

1 reference

describes a project that uses

17 September 2017

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC5016140/fullTextXML

inferred from PubMed Central ID database lookup

cites work

Characterization of soluble RNA-dependent RNA polymerase from dengue virus serotype 2: The polyhistidine tag compromises the polymerase activity

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A novel high throughput biochemical assay to evaluate the HuR protein-RNA complex formation

22 September 2017

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Crystal Structure of the full-length Japanese encephalitis virus NS5 reveals a conserved methyltransferase-polymerase interface

22 September 2017

1 reference

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Structural complexity of Dengue virus untranslated regions: cis-acting RNA motifs and pseudoknot interactions modulating functionality of the viral genome

22 September 2017

1 reference

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Conformational Flexibility of the Dengue Virus RNA-Dependent RNA Polymerase Revealed by a Complex with an Inhibitor

22 September 2017

1 reference

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Structure of Hepatitis C Virus Polymerase in Complex with Primer-Template RNA

22 September 2017

1 reference

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Structural platform for the autolytic activity of an intact NS2B-NS3 protease complex from dengue virus

22 September 2017

1 reference

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Defective interfering viral particles in acute dengue infections

22 September 2017

1 reference

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Identification of cis-acting elements in the 3'-untranslated region of the dengue virus type 2 RNA that modulate translation and replication

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5016140

RNA sequences and structures required for the recruitment and activity of the dengue virus polymerase

22 September 2017

1 reference

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RBPDB: a database of RNA-binding specificities

22 September 2017

1 reference

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A balance between circular and linear forms of the dengue virus genome is crucial for viral replication

22 September 2017

1 reference

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Dali server: conservation mapping in 3D

22 September 2017

1 reference

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Selections that optimize RNA display in the yeast three-hybrid system

22 September 2017

1 reference

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Experimental evidence that RNA recombination occurs in the Japanese encephalitis virus

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5016140

Identification of a recombinant dengue virus type 1 with 3 recombination regions in natural populations in Guangdong province, China

22 September 2017

1 reference

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Identification of soluble protein fragments by gene fragmentation and genetic selection.

22 September 2017

1 reference

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Crystal Structure of the Dengue Virus RNA-Dependent RNA Polymerase Catalytic Domain at 1.85-Angstrom Resolution

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5016140

Crystal structure of the RNA polymerase domain of the West Nile virus non-structural protein 5

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5016140

Sequence-specific binding of single-stranded RNA: is there a code for recognition?

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5016140

A 5' RNA element promotes dengue virus RNA synthesis on a circular genome

22 September 2017

1 reference

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Inhibition of dengue virus translation and RNA synthesis by a morpholino oligomer targeted to the top of the terminal 3' stem-loop structure

22 September 2017

1 reference

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Role of RNA structures present at the 3'UTR of dengue virus on translation, RNA synthesis, and viral replication

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5016140

Immune responses to dsRNA: implications for gene silencing technologies

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5016140

Crystal structures of the RNA-dependent RNA polymerase genotype 2a of hepatitis C virus reveal two conformations and suggest mechanisms of inhibition by non-nucleoside inhibitors

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5016140

RNA-protein interactions in the yeast three-hybrid system: affinity, sensitivity, and enhanced library screening

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5016140

Kissing-loop interaction in the 3' end of the hepatitis C virus genome essential for RNA replication

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5016140

Significance in Replication of the Terminal Nucleotides of the Flavivirus Genome

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5016140

Mfold web server for nucleic acid folding and hybridization prediction

22 September 2017

1 reference

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The interdomain region of dengue NS5 protein that binds to the viral helicase NS3 contains independently functional importin beta 1 and importin alpha/beta-recognized nuclear localization signals

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5016140

Analyzing mRNA-protein complexes using a yeast three-hybrid system

22 September 2017

1 reference

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Essential role of cyclization sequences in flavivirus RNA replication

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5016140

Template requirements for RNA synthesis by a recombinant hepatitis C virus RNA-dependent RNA polymerase

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5016140

A novel in vitro replication system for Dengue virus. Initiation of RNA synthesis at the 3'-end of exogenous viral RNA templates requires 5'- and 3'-terminal complementary sequence motifs of the viral RNA.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5016140

Specific interaction between the hepatitis C virus NS5B RNA polymerase and the 3' end of the viral RNA

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5016140

Sequence-specific recognition of a subgenomic RNA promoter by a viral RNA polymerase

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5016140

RNA-protein interactions: involvement of NS3, NS5, and 3' noncoding regions of Japanese encephalitis virus genomic RNA

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5016140

Secondary structure of the 3' untranslated region of flaviviruses: similarities and differences

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5016140

A three-hybrid system to detect RNA-protein interactions in vivo

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5016140

Localization of binding site for encephalomyocarditis virus RNA polymerase in the 3'-noncoding region of the viral RNA.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5016140

An RNA motif that binds ATP.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5016140

Conserved elements in the 3' untranslated region of flavivirus RNAs and potential cyclization sequences

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5016140

The 3'-nucleotides of flavivirus genomic RNA form a conserved secondary structure

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5016140

Mutational analysis of the sequence and structural requirements in brome mosaic virus RNA for minus strand promoter activity

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5016140

The structure of bovine viral diarrhea virus RNA-dependent RNA polymerase and its amino-terminal domain

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5016140

The flavivirus-conserved penta-nucleotide in the 3' stem-loop of the West Nile virus genome requires a specific sequence and structure for RNA synthesis, but not for viral translation

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5016140

The majority of the nucleotides in the top loop of the genomic 3' terminal stem loop structure are cis-acting in a West Nile virus infectious clone

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5016140

Template requirement and initiation site selection by hepatitis C virus polymerase on a minimal viral RNA template

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5016140

Requirement of a 3'-terminal stem-loop in in vitro transcription by an RNA-dependent RNA polymerase

20 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27334920

12 December 2020

inferred from PubMed ID database lookup

Overproduction of the yeast STE12 protein leads to constitutive transcriptional induction

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27334920

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1074/JBC.M116.724013

1 reference

17 September 2017

1 reference

17 September 2017

1 reference