Identification of cis-acting elements in the 3'-untranslated region of the dengue virus type 2 RNA that modulate translation and replication (Q35063142)

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English	Identification of cis-acting elements in the 3'-untranslated region of the dengue virus type 2 RNA that modulate translation and replication	scientific article

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scholarly article

1 reference

Europe PubMed Central

6 August 2017

Identification of cis-acting elements in the 3'-untranslated region of the dengue virus type 2 RNA that modulate translation and replication (English)

1 reference

Europe PubMed Central

6 August 2017

1 reference

viral genome replication

1 reference

based on heuristic

inferred from abstract

author name string

Mark Manzano

1

1 reference

Europe PubMed Central

6 August 2017

Erin D Reichert

2

1 reference

Europe PubMed Central

6 August 2017

Stephanie Polo

3

1 reference

Europe PubMed Central

6 August 2017

Barry Falgout

4

1 reference

Europe PubMed Central

6 August 2017

Wojciech Kasprzak

5

1 reference

Europe PubMed Central

6 August 2017

Bruce A Shapiro

6

1 reference

Europe PubMed Central

6 August 2017

Radhakrishnan Padmanabhan

7

1 reference

Europe PubMed Central

6 August 2017

language of work or name

0 references

publication date

22 April 2011

1 reference

Europe PubMed Central

6 August 2017

Journal of Biological Chemistry

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Europe PubMed Central

6 August 2017

286

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Europe PubMed Central

6 August 2017

25

1 reference

Europe PubMed Central

6 August 2017

22521-22534

1 reference

Europe PubMed Central

6 August 2017

describes a project that uses

1 reference

Europe PubMed Central

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3121397/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

RNA sequences and structures required for the recruitment and activity of the dengue virus polymerase

1 reference

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The 5' and 3' downstream AUG region elements are required for mosquito-borne flavivirus RNA replication

1 reference

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8 July 2018

Interplay of RNA elements in the dengue virus 5' and 3' ends required for viral RNA replication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3121397

8 July 2018

Polypyrimidine tract-binding protein is relocated to the cytoplasm and is required during dengue virus infection in Vero cells.

1 reference

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1 reference

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8 July 2018

The polypyrimidine tract-binding protein is required for efficient dengue virus propagation and associates with the viral replication machinery

1 reference

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Poly(A)-binding protein binds to the non-polyadenylated 3' untranslated region of dengue virus and modulates translation efficiency

1 reference

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Conformational Changes in the Solution Structure of the Dengue Virus 5' End in the Presence and Absence of the 3' Untranslated Region

1 reference

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1 reference

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1 reference

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1 reference

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The capsid-coding region hairpin element (cHP) is a critical determinant of dengue virus and West Nile virus RNA synthesis

1 reference

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1 reference

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1 reference

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The Vienna RNA websuite

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Molecular aspects of Dengue virus replication

1 reference

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Functional analysis of dengue virus cyclization sequences located at the 5' and 3'UTRs

1 reference

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West Nile virus genome cyclization and RNA replication require two pairs of long-distance RNA interactions

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Specific requirements for elements of the 5' and 3' terminal regions in flavivirus RNA synthesis and viral replication

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Y box-binding protein-1 binds to the dengue virus 3'-untranslated region and mediates antiviral effects

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Direct repeats in the 3' untranslated regions of mosquito-borne flaviviruses: possible implications for virus transmission.

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Secondary structure of dengue virus type 4 3' untranslated region: impact of deletion and substitution mutations

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1 reference

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A 5' RNA element promotes dengue virus RNA synthesis on a circular genome

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Graphical exploratory data analysis of RNA secondary structure dynamics predicted by the massively parallel genetic algorithm

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8 July 2018

Dengue virus utilizes a novel strategy for translation initiation when cap-dependent translation is inhibited

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RNA Secondary Structure in the Coding Region of Dengue Virus Type 2 Directs Translation Start Codon Selection and Is Required for Viral Replication

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Inhibition of dengue virus translation and RNA synthesis by a morpholino oligomer targeted to the top of the terminal 3' stem-loop structure

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8 July 2018

Role of RNA structures present at the 3'UTR of dengue virus on translation, RNA synthesis, and viral replication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3121397

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Control of Translation by the 5'- and 3'-Terminal Regions of the Dengue Virus Genome

1 reference

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Modulation of the nucleoside triphosphatase/RNA helicase and 5'-RNA triphosphatase activities of Dengue virus type 2 nonstructural protein 3 (NS3) by interaction with NS5, the RNA-dependent RNA polymerase.

1 reference

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Long-Range RNA-RNA Interactions Circularize the Dengue Virus Genome

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8 July 2018

The topology of bulges in the long stem of the flavivirus 3' stem-loop is a major determinant of RNA replication competence.

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A structural perspective of the flavivirus life cycle

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8 July 2018

Enhancement of dengue virus translation: role of the 3' untranslated region and the terminal 3' stem-loop domain

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3121397

8 July 2018

5'- and 3'-noncoding regions in flavivirus RNA.

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8 July 2018

Functional Analysis of Mosquito-Borne Flavivirus Conserved Sequence Elements within 3' Untranslated Region of West Nile Virus by Use of a Reporting Replicon That Differentiates between Viral Translation and RNA Replication

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De Novo Synthesis of Negative-Strand RNA by Dengue Virus RNA-Dependent RNA Polymerase In Vitro: Nucleotide, Primer, and Template Parameters

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8 July 2018

Sequence comparison and secondary structure analysis of the 3' noncoding region of flavivirus genomes reveals multiple pseudoknots.

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

BHK cell proteins that bind to the 3' stem-loop structure of the West Nile virus genome RNA

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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27 September 2018

A Boltzmann filter improves the prediction of RNA folding pathways in a massively parallel genetic algorithm.

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Stem Trace: an interactive visual tool for comparative RNA structure analysis.

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STRUCTURELAB: a heterogeneous bioinformatics system for RNA structure analysis.

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RNA folding pathway functional intermediates: their prediction and analysis

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1074/JBC.M111.234302

1 reference

Europe PubMed Central

6 August 2017

1 reference

Europe PubMed Central

6 August 2017

1 reference

Europe PubMed Central

6 August 2017

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