Synthetic physiology strategies for adapting tools from nature for genetically targeted control of fast biological processes. (Q39538775)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21601097%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

title

Synthetic physiology strategies for adapting tools from nature for genetically targeted control of fast biological processes (English)

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1 February 2020

3

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1 February 2020

4

Edward S Boyden

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1 February 2020

author name string

Brian Y Chow

series ordinal

1

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1 February 2020

Amy S Chuong

series ordinal

2

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language of work or name

English

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publication date

1 January 2011

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1 February 2020

published in

Methods in Enzymology

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1 February 2020

volume

497

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1 February 2020

page(s)

425-443

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Rapid blue-light-mediated induction of protein interactions in living cells

1 February 2020

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13 September 2017

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13 September 2017

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Intestinal signaling to GABAergic neurons regulates a rhythmic behavior in Caenorhabditis elegans

13 September 2017

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Optogenetic analysis of synaptic function

13 September 2017

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Optical induction of plasticity at single synapses reveals input-specific accumulation of alphaCaMKII

13 September 2017

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Escape behavior elicited by single, channelrhodopsin-2-evoked spikes in zebrafish somatosensory neurons

13 September 2017

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eNpHR: a Natronomonas halorhodopsin enhanced for optogenetic applications

13 September 2017

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Neurons born in the adult dentate gyrus form functional synapses with target cells

13 September 2017

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A FLEX switch targets Channelrhodopsin-2 to multiple cell types for imaging and long-range circuit mapping

13 September 2017

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Refinement and standardization of synthetic biological parts and devices

13 September 2017

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Channelrhodopsin-1 initiates phototaxis and photophobic responses in chlamydomonas by immediate light-induced depolarization

13 September 2017

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LED arrays as cost effective and efficient light sources for widefield microscopy

13 September 2017

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Light-activated channels targeted to ON bipolar cells restore visual function in retinal degeneration

13 September 2017

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A multicolor panel of novel lentiviral "gene ontology" (LeGO) vectors for functional gene analysis.

13 September 2017

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High-throughput electrophysiology: an emerging paradigm for ion-channel screening and physiology

13 September 2017

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Sparse optical microstimulation in barrel cortex drives learned behaviour in freely moving mice

13 September 2017

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Structural role of bacterioruberin in the trimeric structure of archaerhodopsin-2

13 September 2017

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Neural substrates of awakening probed with optogenetic control of hypocretin neurons

13 September 2017

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An optical neural interface: in vivo control of rodent motor cortex with integrated fiberoptic and optogenetic technology

13 September 2017

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High-speed mapping of synaptic connectivity using photostimulation in Channelrhodopsin-2 transgenic mice

13 September 2017

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13 September 2017

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Channelrhodopsin-2-assisted circuit mapping of long-range callosal projections

13 September 2017

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Multimodal fast optical interrogation of neural circuitry

13 September 2017

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Multiple-color optical activation, silencing, and desynchronization of neural activity, with single-spike temporal resolution

13 September 2017

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Optical induction of synaptic plasticity using a light-sensitive channel.

13 September 2017

1 reference

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Fast manipulation of cellular cAMP level by light in vivo

13 September 2017

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Ectopic expression of a microbial-type rhodopsin restores visual responses in mice with photoreceptor degeneration

13 September 2017

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Light activation of channelrhodopsin-2 in excitable cells of Caenorhabditis elegans triggers rapid behavioral responses

13 September 2017

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Fast noninvasive activation and inhibition of neural and network activity by vertebrate rhodopsin and green algae channelrhodopsin

13 September 2017

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Millisecond-timescale, genetically targeted optical control of neural activity

13 September 2017

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Channelrhodopsin-2, a directly light-gated cation-selective membrane channel

13 September 2017

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Channelrhodopsin-1: a light-gated proton channel in green algae.

13 September 2017

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Composition and arrangement of genes define the strength of IRES-driven translation in bicistronic mRNAs

13 September 2017

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Crystal Structure of Sensory Rhodopsin II at 2.4 Angstroms: Insights into Color Tuning and Transducer Interaction

13 September 2017

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Role of ER export signals in controlling surface potassium channel numbers

13 September 2017

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Modelling cellular behaviour

13 September 2017

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Structure of the light-driven chloride pump halorhodopsin at 1.8 A resolution

13 September 2017

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Structural changes in bacteriorhodopsin during ion transport at 2 angstrom resolution

13 September 2017

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Structure of bacteriorhodopsin at 1.55 A resolution

13 September 2017

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Light-driven proton or chloride pumping by halorhodopsin

13 September 2017

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Aspartic acid substitutions affect proton translocation by bacteriorhodopsin

13 September 2017

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Bacteriorhodopsin mutants containing single tyrosine to phenylalanine substitutions are all active in proton translocation

13 September 2017

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Aspartic acid-96 is the internal proton donor in the reprotonation of the Schiff base of bacteriorhodopsin

13 September 2017

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Replacement of aspartic residues 85, 96, 115, or 212 affects the quantum yield and kinetics of proton release and uptake by bacteriorhodopsin.

13 September 2017

1 reference

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Fast, repetitive light-activation of CaV3.2 using channelrhodopsin 2.

13 September 2017

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Faithful expression of multiple proteins via 2A-peptide self-processing: a versatile and reliable method for manipulating brain circuits.

14 September 2017

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Patterned optical activation of retinal ganglion cells

14 September 2017

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Comparative analysis of molecular strategies attenuating positional effects in lentiviral vectors carrying multiple genes.

14 September 2017

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Surface expression of inward rectifier potassium channels is controlled by selective Golgi export

14 September 2017

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IRES-dependent second gene expression is significantly lower than cap-dependent first gene expression in a bicistronic vector

14 September 2017

1 reference

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Chemical reconstitution of a chloride pump inactivated by a single point mutation.

25 September 2017

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The photocycle of the chloride pump halorhodopsin. II: Quantum yields and a kinetic model.

25 September 2017

1 reference

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The photocycle of the chloride pump halorhodopsin. I: Azide-catalyzed deprotonation of the chromophore is a side reaction of photocycle intermediates inactivating the pump.

25 September 2017

1 reference

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Specific arginine and threonine residues control anion binding and transport in the light-driven chloride pump halorhodopsin

25 September 2017

1 reference

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Structure-function studies on bacteriorhodopsin. V. Effects of amino acid substitutions in the putative helix F.

15 June 2018

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Structure-function studies on bacteriorhodopsin. I. Expression of the bacterio-opsin gene in Escherichia coli.

15 June 2018

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Structure-function studies on bacteriorhodopsin. X. Individual substitutions of arginine residues by glutamine affect chromophore formation, photocycle, and proton translocation

15 June 2018

1 reference

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Structure-function studies on bacteriorhodopsin. IX. Substitutions of tryptophan residues affect protein-retinal interactions in bacteriorhodopsin

15 June 2018

1 reference

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Structure-function studies on bacteriorhodopsin. VIII. Substitutions of the membrane-embedded prolines 50, 91, and 186: the effects are determined by the substituting amino acids.

15 June 2018

1 reference

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Structure-function studies of bacteriorhodopsin XV. Effects of deletions in loops B-C and E-F on bacteriorhodopsin chromophore and structure.

15 June 2018

1 reference

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Bacteriorhodopsin mutants containing single substitutions of serine or threonine residues are all active in proton translocation.

15 June 2018

1 reference

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A toolbox for light control of Drosophila behaviors through Channelrhodopsin 2-mediated photoactivation of targeted neurons.

15 June 2018

1 reference

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Light-induced activation of distinct modulatory neurons triggers appetitive or aversive learning in Drosophila larvae.

21 August 2018

1 reference

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Crystal structures of archaerhodopsin-1 and -2: Common structural motif in archaeal light-driven proton pumps.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549548

Kinetic evaluation of photosensitivity in genetically engineered neurons expressing green algae light-gated channels.

21 August 2018

1 reference

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Selective Golgi export of Kir2.1 controls the stoichiometry of functional Kir2.x channel heteromers

21 August 2018

1 reference

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The pace and proliferation of biological technologies.

21 August 2018

1 reference

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Roles of Ser130 and Thr126 in chloride binding and photocycle of pharaonis halorhodopsin.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549548

Ser-130 of Natronobacterium pharaonis halorhodopsin is important for the chloride binding.

21 August 2018

1 reference

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Lentiviral vectors with two independent internal promoters transfer high-level expression of multiple transgenes to human hematopoietic stem-progenitor cells

21 August 2018

1 reference

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Influence exercised by histidine-95 on chloride transport and the photocycle in halorhodopsin.

21 August 2018

1 reference

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Hydrophobic amino acids in the retinal-binding pocket of bacteriorhodopsin.

21 August 2018

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The Synthetic Gene Designer: a flexible web platform to explore sequence manipulation for heterologous expression

21 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21601097

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Aspartic acid 85 in bacteriorhodopsin functions both as proton acceptor and negative counterion to the Schiff base

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21601097

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/B978-0-12-385075-1.00018-4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21601097%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21601097%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

1 reference