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Design parameters to control synthetic gene expression in Escherichia coli (Q21090049)

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scientific article published in 2009

Design Parameters to Control Synthetic Gene Expression in Escherichia coli

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English	Design parameters to control synthetic gene expression in Escherichia coli	scientific article published in 2009	Design Parameters to Control Synthetic Gene Expression in Escherichia coli

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scholarly article

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Design parameters to control synthetic gene expression in Escherichia coli (English)

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Escherichia coli

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Claes M. Gustafsson

7

object named as

Claes Gustafsson

author given names

Claes

author last names

Gustafsson

1 reference

PubMed publication ID

8 August 2022

author name string

Mark Welch

1

author given names

Mark

author last names

Welch

1 reference

PubMed publication ID

8 August 2022

Sridhar Govindarajan

2

author given names

Sridhar

author last names

Govindarajan

1 reference

PubMed publication ID

8 August 2022

Jon E Ness

3

author given names

Jon E

author last names

Ness

1 reference

PubMed publication ID

8 August 2022

Alan Villalobos

4

author given names

Alan

author last names

Villalobos

1 reference

PubMed publication ID

8 August 2022

Austin Gurney

5

author given names

Austin

author last names

Gurney

1 reference

PubMed publication ID

8 August 2022

Jeremy Minshull

6

author given names

Jeremy

author last names

Minshull

1 reference

PubMed publication ID

8 August 2022

publication date

2009

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language of work or name

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4

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9

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e7002

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copyright license

Creative Commons Attribution 4.0 International

14 September 2009

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April 2022 Public Data File from Crossref

copyright status

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Engineering proteinase K using machine learning and synthetic genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736378

19 March 2017

SGDB: a database of synthetic genes re-designed for optimizing protein over-expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736378

19 March 2017

Gene Designer: a synthetic biology tool for constructing artificial DNA segments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736378

19 March 2017

The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736378

19 March 2017

Environmental genome shotgun sequencing of the Sargasso Sea

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736378

19 March 2017

EMBOSS: the European Molecular Biology Open Software Suite

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736378

19 March 2017

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736378

19 March 2017

Characterization and purification of a phage phi 29-encoded DNA polymerase required for the initiation of replication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736378

19 March 2017

Coding-sequence determinants of gene expression in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736378

12 September 2017

You're one in a googol: optimizing genes for protein expression.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736378

12 September 2017

Translation initiation and the fate of bacterial mRNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736378

12 September 2017

Selective charging of tRNA isoacceptors induced by amino-acid starvation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736378

12 September 2017

Sequential multiple functions of the conserved sequence in sequence-specific termination by T7 RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736378

12 September 2017

Using chemometrics for navigating in the large data sets of genomics, proteomics, and metabonomics (gpm).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736378

12 September 2017

Codon bias and heterologous protein expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736378

12 September 2017

Probing the substrate specificity of Escherichia coli RNase E using a novel oligonucleotide-based assay

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736378

12 September 2017

Codon bias at the 3'-side of the initiation codon is correlated with translation initiation efficiency in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736378

12 September 2017

Effects of rare codon clusters on high-level expression of heterologous proteins in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736378

12 September 2017

Nonrandom utilization of codon pairs in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736378

12 September 2017

Relationship between protein synthesis and concentrations of charged and uncharged tRNATrp in Escherichia coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736378

12 September 2017

Expression in Escherichia coli of a chemically synthesized gene for the hormone somatostatin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736378

12 September 2017

A codon window in mRNA downstream of the initiation codon where NGG codons give strongly reduced gene expression in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736378

27 September 2017

Accumulation of a mRNA decay intermediate by ribosomal pausing at a stop codon

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736378

27 September 2017

Effects of a minor isoleucyl tRNA on heterologous protein translation in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736378

27 September 2017

Reduced synonymous substitution rate at the start of enterobacterial genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736378

27 September 2017

Gratuitous overexpression of genes in Escherichia coli leads to growth inhibition and ribosome destruction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736378

27 September 2017

The stability of Escherichia coli lacZ mRNA depends upon the simultaneity of its synthesis and translation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736378

27 September 2017

Optimal encoding rules for synthetic genes: the need for a community effort

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736378

30 May 2018

Parameters affecting transcription termination by Escherichia coli RNA. II. Construction and analysis of hybrid terminators

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736378

30 May 2018

Selective charging of tRNA isoacceptors explains patterns of codon usage

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736378

30 May 2018

Codon optimization can improve expression of human genes in Escherichia coli: A multi-gene study

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0007002

21 January 2018

Anatomy of Escherichia coli ribosome binding sites

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0007002

21 January 2018

Codon pairs in the genome of Escherichia coli

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0007002

21 January 2018

Influences on translation initiation and early elongation by the messenger RNA region flanking the initiation codon at the 3' side

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0007002

21 January 2018

Amino acid content of recombinant proteins influences the metabolic burden response

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0007002

21 January 2018

Structured model to predict intracellular amino acid shortages during recombinant protein overexpression in E. coli

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0007002

21 January 2018

Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0007002

21 January 2018

Over expression of a tRNA(Leu) isoacceptor changes charging pattern of leucine tRNAs and reveals new codon reading

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0007002

21 January 2018

Cooperative effects by the initiation codon and its flanking regions on translation initiation

1 reference

https://pubmed.ncbi.nlm.nih.gov/19759823

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Abortive translation caused by peptidyl-tRNA drop-off at NGG codons in the early coding region of mRNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/19759823

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Codon optimizer: a freeware tool for codon optimization

1 reference

https://pubmed.ncbi.nlm.nih.gov/19759823

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A rapid method for the construction of synthetic genes using the polymerase chain reaction

1 reference

https://pubmed.ncbi.nlm.nih.gov/19759823

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Role of the AGA/AGG codons, the rarest codons in global gene expression in Escherichia coli

1 reference

https://pubmed.ncbi.nlm.nih.gov/19759823

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PONE.0007002

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2009PLoSO...4.7002W

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OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PMC publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PubMed publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

ResearchGate publication ID

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