Improving tRNAscan-SE Annotation Results via Ensemble Classifiers (Q39524650)

12 September 2017

Improving tRNAscan-SE Annotation Results via Ensemble Classifiers (English)

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12 September 2017

Quan Zou

1

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12 September 2017

Jiasheng Guo

2

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12 September 2017

Ying Ju

3

1 reference

12 September 2017

Meihong Wu

4

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12 September 2017

Xiangxiang Zeng

5

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12 September 2017

Zhiling Hong

6

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12 September 2017

14 September 2015

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12 September 2017

Molecular Informatics

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12 September 2017

34

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12 September 2017

11-12

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12 September 2017

761-770

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

12 September 2017

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

Rapid and sensitive sequence comparison with FASTP and FASTA

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

ARWEN: a program to detect tRNA genes in metazoan mitochondrial nucleotide sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

Identification of new eukaryotic tRNA genes in genomic DNA databases by a multistep weight matrix analysis of transcriptional control regions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

RNA sequence analysis using covariance models

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

tRNAdb 2009: compilation of tRNA sequences and tRNA genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

Classification of real and pseudo microRNA precursors using local structure-sequence features and support vector machine.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

Secondary structure adventures with Carl Woese

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

nDNA-Prot: identification of DNA-binding proteins based on unbalanced classification.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

RNAalifold: improved consensus structure prediction for RNA alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

RNA folding with soft constraints: reconciliation of probing data and thermodynamic secondary structure prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

RNAshapes: an integrated RNA analysis package based on abstract shapes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

miRNA-dis: microRNA precursor identification based on distance structure status pairs

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

Performing four basic arithmetic operations with spiking neural P systems.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

Spiking neural P systems with thresholds.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

Recurrent neural network for non-smooth convex optimization problems with application to the identification of genetic regulatory networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

Projection-based ensemble learning for ordinal regression.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

Logistic regression for disease classification using microarray data: model selection in a large p and small n case

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

Random forest: a classification and regression tool for compound classification and QSAR modeling

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

ML-KNN: A lazy learning approach to multi-label learning

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

Predicting subcellular localization of mycobacterial proteins by using Chou's pseudo amino acid composition.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

iPro54-PseKNC: a sequence-based predictor for identifying sigma-54 promoters in prokaryote with pseudo k-tuple nucleotide composition

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

Identification of bacteriophage virion proteins by the ANOVA feature selection and analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

iDNA-Prot|dis: identifying DNA-binding proteins by incorporating amino acid distance-pairs and reduced alphabet profile into the general pseudo amino acid composition

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

PseDNA-Pro: DNA-Binding Protein Identification by Combining Chou's PseAAC and Physicochemical Distance Transformation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

Prediction of protein binding sites in protein structures using hidden Markov support vector machine

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

A discriminative method for protein remote homology detection and fold recognition combining Top-n-grams and latent semantic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

Using amino acid physicochemical distance transformation for fast protein remote homology detection

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

Prediction of lysine ubiquitination with mRMR feature selection and analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

Prediction of protein amidation sites by feature selection and analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

Prediction of protein domain with mRMR feature selection and analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

Minimum redundancy feature selection from microarray gene expression data

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

repDNA: a Python package to generate various modes of feature vectors for DNA sequences by incorporating user-defined physicochemical properties and sequence-order effects

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

MIRs are classic, tRNA-derived SINEs that amplified before the mammalian radiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

SINEBase: a database and tool for SINE analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

Survey of MapReduce frame operation in bioinformatics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

Computational approaches in detecting non- coding RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

RAID: a comprehensive resource for human RNA-associated (RNA-RNA/RNA-protein) interaction

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

Pinpointing disease genes through phenomic and genomic data fusion.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

LncRNA2Target: a database for differentially expressed genes after lncRNA knockdown or overexpression

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

Representation of fluctuation features in pathological knee joint vibroarthrographic signals using kernel density modeling method.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FMINF.201500031

sgRNACNN: identifying sgRNA on-target activity in four crops using ensembles of convolutional neural networks

21 January 2018

1 reference

COCI

https://opencitations.net/index/coci/api/v1/references/10.1002/MINF.201500031

The WEKA data mining software: an update

8 April 2023

1 reference

COCI

https://opencitations.net/index/coci/api/v1/references/10.1002/MINF.201500031

Exploiting three kinds of interface propensities to identify protein binding sites

8 April 2023

1 reference

COCI

https://opencitations.net/index/coci/api/v1/references/10.1002/MINF.201500031

8 April 2023

Identifiers

DOI

10.1002/MINF.201500031

1 reference

12 September 2017

1 reference