Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina-associated domains (Q39436834)

12 September 2017

Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina-associated domains (English)

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12 September 2017

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Benjamin P Berman

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David Van Den Berg

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object named as

David Van Den Berg

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12 September 2017

Daniel J Weisenberger

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12 September 2017

Joseph F Aman

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12 September 2017

Toshinori Hinoue

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12 September 2017

Zachary Ramjan

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12 September 2017

Yaping Liu

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12 September 2017

Christopher P E Lange

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12 September 2017

Cornelis M van Dijk

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Rob A E M Tollenaar

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12 September 2017

Peter W Laird

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language of work or name

English

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publication date

27 November 2011

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12 September 2017

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44

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40-46

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https://scigraph.springernature.com/pub.10.1038/ng.969

12 September 2017

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cites work

Genome-scale analysis of aberrant DNA methylation in colorectal cancer

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A user's guide to the encyclopedia of DNA elements (ENCODE)

12 September 2017

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Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells

12 September 2017

1 reference

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A unique chromatin signature uncovers early developmental enhancers in humans

12 September 2017

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Genome architecture marked by retrotransposons modulates predisposition to DNA methylation in cancer

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309644

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities

12 September 2017

1 reference

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Distinct epigenomic landscapes of pluripotent and lineage-committed human cells.

12 September 2017

1 reference

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Identification of a CpG island methylator phenotype that defines a distinct subgroup of glioma

12 September 2017

1 reference

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Consolidation of the cancer genome into domains of repressive chromatin by long-range epigenetic silencing (LRES) reduces transcriptional plasticity

12 September 2017

1 reference

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General transcription factor binding at CpG islands in normal cells correlates with resistance to de novo DNA methylation in cancer cells

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309644

Sequencing newly replicated DNA reveals widespread plasticity in human replication timing

12 September 2017

1 reference

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Human DNA methylomes at base resolution show widespread epigenomic differences

12 September 2017

1 reference

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Comprehensive mapping of long-range interactions reveals folding principles of the human genome

12 September 2017

1 reference

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The NRG1 gene is frequently silenced by methylation in breast cancers and is a strong candidate for the 8p tumour suppressor gene

12 September 2017

1 reference

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Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data

12 September 2017

1 reference

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The Sequence Alignment/Map format and SAMtools

12 September 2017

1 reference

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Epigenetic silencing of the p16(INK4a) tumor suppressor is associated with loss of CTCF binding and a chromatin boundary

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309644

Histone modifications at human enhancers reflect global cell-type-specific gene expression

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309644

ChIP-seq accurately predicts tissue-specific activity of enhancers

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309644

The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309644

Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309644

Frequent switching of Polycomb repressive marks and DNA hypermethylation in the PC3 prostate cancer cell line

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309644

An Sp1/Sp3 binding polymorphism confers methylation protection.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309644

Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309644

A stem cell-like chromatin pattern may predispose tumor suppressor genes to DNA hypermethylation and heritable silencing

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309644

Epigenetic stem cell signature in cancer

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309644

Polycomb-mediated methylation on Lys27 of histone H3 pre-marks genes for de novo methylation in cancer

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309644

Worms gang up on bacteria

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309644

The DNA methylation paradox

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309644

c-Jun N-terminal phosphorylation antagonises recruitment of the Mbd3/NuRD repressor complex

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309644

Replication timing-related and gene body-specific methylation of active human genes.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309644

Gene body-specific methylation on the active X chromosome

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309644

Molecular maps of the reorganization of genome-nuclear lamina interactions during differentiation

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309644

A species-generalized probabilistic model-based definition of CpG islands

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309644

Integrated study of copy number states and genotype calls using high-density SNP arrays

17 June 2018

1 reference

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JMJD3 is a histone H3K27 demethylase.

17 June 2018

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Frequent loss of SFRP1 expression in multiple human solid tumours: association with aberrant promoter methylation in renal cell carcinoma.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309644

Characterization of the Drosophila melanogaster genome at the nuclear lamina.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309644

Epigenetic remodeling in colorectal cancer results in coordinate gene suppression across an entire chromosome band.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309644

The fundamental role of epigenetic events in cancer

21 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNG.969

21 January 2018

Identifiers

DOI

10.1038/NG.969

1 reference

Dimensions Publication ID

12 September 2017

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12 September 2017

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