Sequencing newly replicated DNA reveals widespread plasticity in human replication timing (Q33591861)

28 July 2017

title

Sequencing newly replicated DNA reveals widespread plasticity in human replication timing (English)

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28 July 2017

3

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28 July 2017

John Stamatoyannopoulos

9

object named as

John A Stamatoyannopoulos

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28 July 2017

R Scott Hansen

1

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28 July 2017

Sean Thomas

2

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28 July 2017

Theresa K Canfield

4

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28 July 2017

Robert E Thurman

5

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28 July 2017

Molly Weaver

6

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28 July 2017

Michael O Dorschner

7

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28 July 2017

Stanley M Gartler

8

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28 July 2017

publication date

4 December 2009

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Proceedings of the National Academy of Sciences of the United States of America

28 July 2017

language of work or name

English

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number of pages

6

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based on heuristic

inferred from page(s)

published in

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28 July 2017

volume

107

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28 July 2017

issue

1

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28 July 2017

page(s)

139-144

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Human mutation rate associated with DNA replication timing

28 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2806781

Chromatin state marks cell-type- and gender-specific replication of the Drosophila genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2806781

Global reorganization of replication domains during embryonic stem cell differentiation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2806781

Genome-wide studies highlight indirect links between human replication origins and gene regulation.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2806781

Global organization of replication time zones of the mouse genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2806781

Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2806781

Widespread monoallelic expression on human autosomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2806781

Status of genomic imprinting in human embryonic stem cells as revealed by a large cohort of independently derived and maintained lines

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2806781

LRRTM1 on chromosome 2p12 is a maternally suppressed gene that is associated paternally with handedness and schizophrenia

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2806781

Replication in context: dynamic regulation of DNA replication patterns in metazoans

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2806781

Pan-S replication patterns and chromosomal domains defined by genome-tiling arrays of ENCODE genomic areas

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2806781

Dosage compensation in mammals: fine-tuning the expression of the X chromosome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2806781

THE ORGANIZATION AND DUPLICATION OF CHROMOSOMES AS REVEALED BY AUTORADIOGRAPHIC STUDIES USING TRITIUM-LABELED THYMIDINEE.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2806781

Maintenance of X- and Y-inactivation of the pseudoautosomal (PAR2) gene SPRY3 is independent from DNA methylation and associated to multiple layers of epigenetic modifications

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2806781

Shaping time: chromatin structure and the DNA replication programme

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2806781

Temporal profile of replication of human chromosomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2806781

X-inactivation profile reveals extensive variability in X-linked gene expression in females

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2806781

DNA replication-timing analysis of human chromosome 22 at high resolution and different developmental states

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2806781

Monoallelic expression and asynchronous replication of p120 catenin in mouse and human cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2806781

Replication timing of the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2806781

Epigenomic replication: linking epigenetics to DNA replication

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2806781

Heterogeneity of eukaryotic replicons, replicon clusters, and replication foci

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2806781

Evidence that a single replication fork proceeds from early to late replicating domains in the IgH locus in a non-B cell line

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2806781

Allele-specific late replication and fragility of the most active common fragile site, FRA3B.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2806781

Replicon clusters are stable units of chromosome structure: evidence that nuclear organization contributes to the efficient activation and propagation of S phase in human cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2806781

A variable domain of delayed replication in FRAXA fragile X chromosomes: X inactivation-like spread of late replication

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2806781

Role of late replication timing in the silencing of X-linked genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2806781

Allele-specific replication timing in imprinted domains: absence of asynchrony at several loci

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2806781

High-resolution replication bands compared with morphologic G- and R-bands.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2806781

Replication timing of genes and middle repetitive sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2806781

Replication program of active and inactive multigene families in mammalian cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2806781

Asynchronous DNA replication within the human beta-globin gene locus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2806781

Chromosome-wide assessment of replication timing for human chromosomes 11q and 21q: disease-related genes in timing-switch regions

21 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0912402107

Escape from gene silencing in ICF syndrome: evidence for advanced replication time as a major determinant

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0912402107

Mechanisms of imprinting of the Prader-Willi/Angelman region

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0912402107

Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0912402107

Association of fragile X syndrome with delayed replication of the FMR1 gene

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19966280

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Coordinated replication timing of monoallelically expressed genes along human autosomes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19966280

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0912402107

1 reference

28 July 2017

0 references

1 reference

28 July 2017

1 reference