Resolving Rapid Radiations Within Angiosperm Families Using Anchored Phylogenomics (Q38803994)

6 September 2017

Resolving Rapid Radiations Within Angiosperm Families Using Anchored Phylogenomics (English)

1 reference

6 September 2017

1 reference

Étienne Léveillé-Bourret

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28472459%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Emily Moriarty Lemmon

series ordinal

4

object named as

Emily Moriarty Lemmon

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28472459%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

5

Alan R Lemmon

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28472459%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

3

Bruce A Ford

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28472459%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

author name string

Julian R Starr

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28472459%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

publication date

4 May 2017

1 reference

6 September 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28472459%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

volume

67

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28472459%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

page(s)

94-112

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28472459%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28472459%20AND%20SRC:MED&resulttype=core&format=json

Ribosomal ITS sequences and plant phylogenetic inference

9 June 2020

cites work

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Rapid SNP discovery and genetic mapping using sequenced RAD markers

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Phylogenetic utility of the internal transcribed spacers of nuclear ribosomal DNA in plants: an example from the compositae

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Resolving ancient radiations: can complete plastid gene sets elucidate deep relationships among the tropical gingers (Zingiberales)?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Weighted Statistical Binning: Enabling Statistically Consistent Genome-Scale Phylogenetic Analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

A review of long-branch attraction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Widespread horizontal transfer of mitochondrial genes in flowering plants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Conserved genes, sampling error, and phylogenomic inference.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Gene prediction and annotation in Penstemon (Plantaginaceae): A workflow for marker development from extremely low-coverage genome sequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

MarkerMiner 1.0: A new application for phylogenetic marker development using angiosperm transcriptomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Phylogenomic analyses support the position of turtles as the sister group of birds and crocodiles (Archosauria)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

A comparative study of SVDquartets and other coalescent-based species tree estimation methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Nuclear phylogenomics of the palm subfamily Arecoideae (Arecaceae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Targeted enrichment strategies for next-generation plant biology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Discordance of species trees with their most likely gene trees.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Phylogenetic properties of 50 nuclear loci in Medicago (Leguminosae) generated using multiplexed sequence capture and next-generation sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Inferring phylogeny and introgression using RADseq data: an example from flowering plants (Pedicularis: Orobanchaceae)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Shifts in diversification rates and clade ages explain species richness in higher-level sedge taxa (Cyperaceae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Genotyping-by-sequencing as a tool to infer phylogeny and ancestral hybridization: a case study in Carex (Cyperaceae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Ultraconserved elements anchor thousands of genetic markers spanning multiple evolutionary timescales

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Better the devil you know? Guidelines for insightful utilization of nrDNA ITS in species-level evolutionary studies in plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Cases in which Parsimony or Compatibility Methods will be Positively Misleading

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Evolutionary history of chloridoid grasses estimated from 122 nuclear loci.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Rise of the machines--recommendations for ecologists when using next generation sequencing for microsatellite development.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Rooting phylogenetic trees with distant outgroups: a case study from the commelinoid monocots.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Smallest angiosperm genomes found in lentibulariaceae, with chromosomes of bacterial size

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Sequence Capture versus Restriction Site Associated DNA Sequencing for Shallow Systematics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Resolution of phylogenetic conflict in large data sets by increased taxon sampling

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

A framework phylogeny of the American oak clade based on sequenced RAD data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

The Utility of Nuclear ITS, aLEAFYHomolog Intron, and ChloroplastatpB-rbcLSpacer Region Data in Phylogenetic Analyses and Species Delimitation in Isoëtes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Unforeseen Consequences of Excluding Missing Data from Next-Generation Sequences: Simulation Study of RAD Sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

From famine to feast? Selecting nuclear DNA sequence loci for plant species-level phylogeny reconstruction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

HybPiper: Extracting coding sequence and introns for phylogenetics from high-throughput sequencing reads using target enrichment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Evaluating methods for isolating total RNA and predicting the success of sequencing phylogenetically diverse plant transcriptomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Computing the Internode Certainty and Related Measures from Partial Gene Trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Selecting optimal partitioning schemes for phylogenomic datasets

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

A hybrid phylogenetic-phylogenomic approach for species tree estimation in African Agama lizards with applications to biogeography, character evolution, and diversification

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Anchored hybrid enrichment for massively high-throughput phylogenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Rhodoscirpus (Cyperaceae: Scirpeae), a new South American sedge genus supported by molecular, morphological, anatomical and embryological data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Chloroplast phylogenomic analyses resolve deep-level relationships of an intractable bamboo tribe Arundinarieae (poaceae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

A target enrichment method for gathering phylogenetic information from hundreds of loci: An example from the Compositae

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Granule-bound starch synthase: structure, function, and phylogenetic utility

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Utilizing RADseq data for phylogenetic analysis of challenging taxonomic groups: A case study in Carex sect. Racemosae

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Restriction site-associated DNA sequencing, genotyping error estimation and de novo assembly optimization for population genetic inference.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Analysis of a Rapid Evolutionary Radiation Using Ultraconserved Elements: Evidence for a Bias in Some Multispecies Coalescent Methods.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Illumina sequencing library preparation for highly multiplexed target capture and sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

ASTRAL: genome-scale coalescent-based species tree estimation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Evaluating Summary Methods for Multilocus Species Tree Estimation in the Presence of Incomplete Lineage Sorting

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Anchored phylogenomics improves the resolution of evolutionary relationships in the rapid radiation of Protea L.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Phylogeny of Cyperaceae Based on DNA Sequence Data: Current Progress and Future Prospects

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Computational Performance and Statistical Accuracy of *BEAST and Comparisons with Other Methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

APE: Analyses of Phylogenetics and Evolution in R language

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

The largest eukaryotic genome of them all?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

The impact of anchored phylogenomics and taxon sampling on phylogenetic inference in narrow-mouthed frogs (Anura, Microhylidae)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Resolving difficult phylogenetic questions: why more sequences are not enough

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Effectiveness of phylogenomic data and coalescent species-tree methods for resolving difficult nodes in the phylogeny of advanced snakes (Serpentes: Caenophidia).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Horizontal gene transfer in plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

The venom-gland transcriptome of the eastern diamondback rattlesnake (Crotalus adamanteus)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Inferring phylogenies from RAD sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Novel information theory-based measures for quantifying incongruence among phylogenetic trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Automated simultaneous analysis phylogenetics (ASAP): an enabling tool for phlyogenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Fast Coalescent-Based Computation of Local Branch Support from Quartet Frequencies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Phylogenetic marker development for target enrichment from transcriptome and genome skim data: the pipeline and its application in southern African Oxalis (Oxalidaceae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Phylogeny reconstruction: the role of morphology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Spurious 99% bootstrap and jackknife support for unsupported clades.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Plant DNA barcodes and species resolution in sedges (Carex, Cyperaceae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Three new, early diverging Carex (Cariceae, Cyperaceae) lineages from East and Southeast Asia with important evolutionary and biogeographic implications

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Resolving phylogenetic relationships of the recently radiated carnivorous plant genus Sarracenia using target enrichment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Navigating the tip of the genomic iceberg: Next-generation sequencing for plant systematics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Phylogenetic signal detection from an ancient rapid radiation: Effects of noise reduction, long-branch attraction, and model selection in crown clade Apocynaceae

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Universal primers for amplification of three non-coding regions of chloroplast DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Phylogenetic signal and noise: predicting the power of a data set to resolve phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Hyb-Seq: Combining target enrichment and genome skimming for plant phylogenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Transcriptome sequences resolve deep relationships of the grape family

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Deciphering ancient rapid radiations

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

What's in an Outgroup? The Impact of Outgroup Choice on the Phylogenetic Position of Thalattosuchia (Crocodylomorpha) and the Origin of Crocodyliformes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

Genes with minimal phylogenetic information are problematic for coalescent analyses when gene tree estimation is biased

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

An index of substitution saturation and its application

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

DAMBE5: a comprehensive software package for data analysis in molecular biology and evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX050

21 January 2018

Identifiers

DOI

10.1093/SYSBIO/SYX050

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28472459%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

1 reference