ASTRAL: genome-scale coalescent-based species tree estimation (Q34103194)

31 July 2017

ASTRAL: genome-scale coalescent-based species tree estimation (English)

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31 July 2017

1

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31 July 2017

6

T Warnow

1 reference

31 July 2017

R Reaz

2

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31 July 2017

Md S Bayzid

series ordinal

3

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31 July 2017

T Zimmermann

series ordinal

4

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31 July 2017

M S Swenson

series ordinal

5

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31 July 2017

language of work or name

English

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publication date

1 September 2014

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31 July 2017

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30

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31 July 2017

i541-8

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31 July 2017

17

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Creative Commons Attribution-NonCommercial 3.0 Unported

31 July 2017

start time

2 October 2016

1 reference

April 2023 Public Data File from Crossref

copyright status

copyrighted

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cites work

Target capture and massively parallel sequencing of ultraconserved elements for comparative studies at shallow evolutionary time scales

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147915

Identifying localized biases in large datasets: a case study using the avian tree of life

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147915

Phylogenomic analyses of nuclear genes reveal the evolutionary relationships within the BEP clade and the evidence of positive selection in Poaceae

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147915

Origin of land plants using the multispecies coalescent model

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147915

A phylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147915

Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147915

Phylogenomic analyses support the position of turtles as the sister group of birds and crocodiles (Archosauria)

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147915

Full modeling versus summarizing gene-tree uncertainty: method choice and species-tree accuracy

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147915

Fast and accurate methods for phylogenomic analyses

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147915

Algorithms for MDC-based multi-locus phylogeny inference: beyond rooted binary gene trees on single alleles

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147915

A maximum pseudo-likelihood approach for estimating species trees under the coalescent model

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147915

DendroPy: a Python library for phylogenetic computing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147915

Bayesian inference of species trees from multilocus data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147915

Fast and consistent estimation of species trees using supermatrix rooted triples

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147915

Gene tree discordance, phylogenetic inference and the multispecies coalescent

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147915

Is a new and general theory of molecular systematics emerging?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147915

Calculating bootstrap probabilities of phylogeny using multilocus sequence data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147915

Calibration choice, rate smoothing, and the pattern of tetrapod diversification according to the long nuclear gene RAG-1

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147915

Inconsistency of phylogenetic estimates from concatenated data under coalescence

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147915

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147915

Discordance of species trees with their most likely gene trees.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147915

Rose: generating sequence families.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4147915

Identifying the rooted species tree from the distribution of unrooted gene trees under the coalescent.

5 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU462

Robustness to divergence time underestimation when inferring species trees from estimated gene trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU462

Anomalous unrooted gene trees.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU462

BUCKy: gene tree/species tree reconciliation with Bayesian concordance analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU462

BEST: Bayesian estimation of species trees under the coalescent model.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU462

Land plant origins and coalescence confusion

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU462

Naive binning improves phylogenomic analyses

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25161245

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/BIOINFORMATICS/BTU462

1 reference

journals/bioinformatics/MirarabRBZSW14

31 July 2017

1 reference

DBLP Dataset 2021-01-02

release_7yyhhuf4czhvtpyktfo3eveaha

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/7yyhhuf4czhvtpyktfo3eveaha

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMCID

4147915

1 reference

31 July 2017

1 reference