Thermodynamic, kinetic and structural basis for recognition and repair of abasic sites in DNA by apurinic/apyrimidinic endonuclease from human placenta. (Q38335880)

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English	Thermodynamic, kinetic and structural basis for recognition and repair of abasic sites in DNA by apurinic/apyrimidinic endonuclease from human placenta.	scientific article

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3 January 2020

Thermodynamic, kinetic and structural basis for recognition and repair of abasic sites in DNA by apurinic/apyrimidinic endonuclease from human placenta (English)

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3 January 2020

Alexander Ishchenko

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3 January 2020

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Natalia G Beloglazova

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3 January 2020

Oleg O Kirpota

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3 January 2020

Konstantin V Starostin

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3 January 2020

Vitaly I Yamkovoy

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3 January 2020

Dmitry O Zharkov

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3 January 2020

Kenneth T Douglas

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3 January 2020

Georgy A Nevinsky

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30 September 2004

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3 January 2020

Nucleic Acids Research

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3 January 2020

5134-5146

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3 January 2020

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3 January 2020

Recognition of damaged DNA by Escherichia coli Fpg protein: insights from structural and kinetic data

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Thermodynamic, kinetic, and structural basis for recognition and repair of 8-oxoguanine in DNA by Fpg protein from Escherichia coli.

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Analytic binding isotherms describing competitive interactions of a protein ligand with specific and nonspecific sites on the same DNA oligomer

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Structure and function of type II restriction endonucleases

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Interaction of endonuclease ecoRI with short specific and nonspecific oligonucleotides

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Two divalent metal ions in the active site of a new crystal form of human apurinic/apyrimidinic endonuclease, Ape1: implications for the catalytic mechanism

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Abasic site recognition by two apurinic/apyrimidinic endonuclease families in DNA base excision repair: the 3' ends justify the means

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New insights into the structure of abasic DNA from molecular dynamics simulations

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DNA-bound structures and mutants reveal abasic DNA binding by APE1 and DNA repair coordination [corrected]

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A method for detecting abasic sites in living cells: age-dependent changes in base excision repair

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Structural requirements of double and single stranded DNA substrates and inhibitors, including a photoaffinity label, of Fpg protein from Escherichia coli

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Structure of the DNA repair enzyme endonuclease IV and its DNA complex: double-nucleotide flipping at abasic sites and three-metal-ion catalysis

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Possibilities of the method of step-by-step complication of ligand structure in studies of protein--nucleic acid interactions: mechanisms of functioning of some replication, repair, topoisomerization, and restriction enzymes.

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Conserved domains in DNA repair proteins and evolution of repair systems

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Uracil DNA glycosylase: interpretation of X-ray data in the light of kinetic and thermodynamic studies

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Specific binding by EcoRV endonuclease to its DNA recognition site GATATC.

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Abasic site binding by the human apurinic endonuclease, Ape, and determination of the DNA contact sites

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DNase I-induced DNA conformation. 2 A structure of a DNase I-octamer complex

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DNA containing a chemically reduced apurinic site is a high affinity ligand for the E. coli formamidopyrimidine-DNA glycosylase

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23 June 2018

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23 June 2018

Recognition and conversion of single- and double-stranded oligonucleotide substrates by 8-oxoguanine-DNA glycosylase from Escherichia coli.

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23 June 2018

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23 June 2018

The affinity of the Klenow fragment of E. coli DNA-polymerase 1 to primers containing bases noncomplementary to the template and hairpin-like elements

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23 June 2018

Substrate discrimination by formamidopyrimidine-DNA glycosylase: a mutational analysis

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31 August 2018

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31 August 2018

Oligodeoxynucleotides containing synthetic abasic sites. Model substrates for DNA polymerases and apurinic/apyrimidinic endonucleases.

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31 August 2018

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3 December 2018

The impact of abasic sites on DNA flexibility

1 reference

https://pubmed.ncbi.nlm.nih.gov/15459284

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mapping the protein-DNA interface and the metal-binding site of the major human apurinic/apyrimidinic endonuclease

1 reference

https://pubmed.ncbi.nlm.nih.gov/15459284

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

[Apurine/apyrimidine endonuclease from human placenta. Recognition of apurinized DNA by the enzyme]

1 reference

https://pubmed.ncbi.nlm.nih.gov/15459284

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The efficiency of dNTP complex formation with human placenta DNA polymerase alpha as demonstrated by affinity modification

1 reference

https://pubmed.ncbi.nlm.nih.gov/15459284

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

[Isolation and substrate specificity of apurin/apyrimidine endonuclease from human placenta]

1 reference

https://pubmed.ncbi.nlm.nih.gov/15459284

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Single-turnover analysis of mutant human apurinic/apyrimidinic endonuclease

1 reference

https://pubmed.ncbi.nlm.nih.gov/15459284

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

[The mechanism of the supercoiled DNA recognition by eukaryotic type I topoisomerases. I. The enzyme interaction with nonspecific oligonucleotides]

1 reference

https://pubmed.ncbi.nlm.nih.gov/15459284

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

[The mechanism of supercoiled DNA recognition by eukaryotic type I topoisomerases. II. A comparison of the enzyme interaction with specific and nonspecific oligonucleotides]

1 reference

https://pubmed.ncbi.nlm.nih.gov/15459284

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Oligonucleotide interactions. III. Circular dichroism studies of the conformation of deoxyoligonucleolides

1 reference

https://pubmed.ncbi.nlm.nih.gov/15459284

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKH846

1 reference

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3 January 2020

1 reference

Europe PubMed Central

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3 January 2020

1 reference

Europe PubMed Central

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3 January 2020

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