Bioinformatics for cancer immunotherapy target discovery (Q38262688)

1 September 2017

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title

Bioinformatics for cancer immunotherapy target discovery (English)

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1 September 2017

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1

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1 September 2017

4

Ole Winther

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Vladimir Brusic

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5

object named as

Vladimir Brusic

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1 September 2017

Benito Campos

2

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1 September 2017

Mike Stein Barnkob

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3

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1 September 2017

Mads Hald Andersen

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6

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1 September 2017

26 October 2014

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Cancer Immunology, Immunotherapy

1 September 2017

15

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published in

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1 September 2017

63

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1 September 2017

12

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1 September 2017

1235-1249

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https://scigraph.springernature.com/pub.10.1007/s00262-014-1627-7

1 September 2017

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cites work

Immunotherapy of cancer in 2012.

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Specific recruitment of regulatory T cells in ovarian carcinoma fosters immune privilege and predicts reduced survival

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Myeloid-derived suppressor cells as regulators of the immune system

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Immune escape as a fundamental trait of cancer: focus on IDO.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

IL-4-induced arginase 1 suppresses alloreactive T cells in tumor-bearing mice

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Inflammation-associated immune suppression in cancer: the roles played by cytokines, chemokines and additional mediators

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Regulation of the innate and adaptive immune responses by Stat-3 signaling in tumor cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

PD-L2 is a second ligand for PD-1 and inhibits T cell activation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Allele-specific motifs revealed by sequencing of self-peptides eluted from MHC molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

The crystal structure of a T cell receptor in complex with peptide and MHC class II

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Inhibitors of the proteasome block the degradation of most cell proteins and the generation of peptides presented on MHC class I molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Evidence that transporters associated with antigen processing translocate a major histocompatibility complex class I-binding peptide into the endoplasmic reticulum in an ATP-dependent manner

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

On the relation of products of activated lymphocytes to cell-mediated cytolysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

A Gene Encoding an Antigen Recognized by Cytolytic T Lymphocytes on a Human Melanoma

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Human tumor antigens recognized by T lymphocytes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

T cell defined tumor antigens

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

The prioritization of cancer antigens: a national cancer institute pilot project for the acceleration of translational research

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

A listing of human tumor antigens recognized by T cells: March 2004 update

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Tumor-specific antigens and immunologic adjuvants in cancer immunotherapy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Structure of the gene of tum- transplantation antigen P91A: the mutated exon encodes a peptide recognized with Ld by cytolytic T cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

The structural basis of antigen-antibody recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Cancer immunoediting: from immunosurveillance to tumor escape

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Peptide-MHC class I stability is a better predictor than peptide affinity of CTL immunogenicity

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

How TCRs bind MHCs, peptides, and coreceptors

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Delineation of prognostic biomarkers in prostate cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Validation and clinical utility of a 70-gene prognostic signature for women with node-negative breast cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Mosaic amplification of multiple receptor tyrosine kinase genes in glioblastoma.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Intratumor heterogeneity in human glioblastoma reflects cancer evolutionary dynamics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

HLA class I antigen loss, tumor immune escape and immune selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Immune selection of hot-spot beta 2-microglobulin gene mutations, HLA-A2 allospecificity loss, and antigen-processing machinery component down-regulation in melanoma cells derived from recurrent metastases following immunotherapy

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Identifying potential tumor markers and antigens by database mining and rapid expression screening

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Identification of cancer/testis genes by database mining and mRNA expression analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

DNA chips: state-of-the art.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

RNA-Seq: a revolutionary tool for transcriptomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Bioconductor: open software development for computational biology and bioinformatics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Gitools: analysis and visualisation of genomic data using interactive heat-maps

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Mining the plasma proteome for cancer biomarkers

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Mass spectrometry in high-throughput proteomics: ready for the big time.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

NCBI GEO: archive for functional genomics data sets--update

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Minimum information about a microarray experiment (MIAME)-toward standards for microarray data

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Oncomine 3.0: genes, pathways, and networks in a collection of 18,000 cancer gene expression profiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

HemaExplorer: a database of mRNA expression profiles in normal and malignant haematopoiesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Correlations between RNA and protein expression profiles in 23 human cell lines

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Towards a knowledge-based Human Protein Atlas

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

The 2013 Nucleic Acids Research Database Issue and the online molecular biology database collection

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

CTdatabase: a knowledge-base of high-throughput and curated data on cancer-testis antigens

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Human breast cancer: correlation of relapse and survival with amplification of the HER-2/neu oncogene

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Overexpression of HER-2/neu and its relationship with other prognostic factors change during the progression of in situ to invasive breast cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Identification of an immunodominant peptide of HER-2/neu protooncogene recognized by ovarian tumor-specific cytotoxic T lymphocyte lines

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Humanization of an anti-p185HER2 antibody for human cancer therapy

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

ArrayExpress update--trends in database growth and links to data analysis tools

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

McKusick's Online Mendelian Inheritance in Man (OMIM)

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

GeneCards Version 3: the human gene integrator

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Update on activities at the Universal Protein Resource (UniProt) in 2013

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

A kinetic model of vertebrate 20S proteasome accounting for the generation of major proteolytic fragments from oligomeric peptide substrates

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

An algorithm for the prediction of proteasomal cleavages

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Prediction of proteasome cleavage motifs by neural networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Identifying MHC class I epitopes by predicting the TAP transport efficiency of epitope precursors.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

PRED(TAP): a system for prediction of peptide binding to the human transporter associated with antigen processing

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

TAPPred prediction of TAP-binding peptides in antigens.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Predicting proteasomal cleavage sites: a comparison of available methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Machine learning competition in immunology - Prediction of HLA class I binding peptides.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Evaluation of MHC class I peptide binding prediction servers: applications for vaccine research

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Evaluation of MHC-II peptide binding prediction servers: applications for vaccine research

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Accurate approximation method for prediction of class I MHC affinities for peptides of length 8, 10 and 11 using prediction tools trained on 9mers.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

NN-align. An artificial neural network-based alignment algorithm for MHC class II peptide binding prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

SYFPEITHI: database for searching and T-cell epitope prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Ensemble approaches for improving HLA class I-peptide binding prediction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Modeling major histocompatibility complex binding by nonparametric averaging of multiple predictors and sequence encodings.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

NetMHCpan, a method for quantitative predictions of peptide binding to any HLA-A and -B locus protein of known sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

A flexible docking approach for prediction of T cell receptor-peptide-MHC complexes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

POPISK: T-cell reactivity prediction using support vector machines and string kernels

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

PAAQD: Predicting immunogenicity of MHC class I binding peptides using amino acid pairwise contact potentials and quantum topological molecular similarity descriptors

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Conservation analysis of dengue virus T-cell epitope-based vaccine candidates using Peptide block entropy

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Molecular detection of targeted major histocompatibility complex I-bound peptides using a probabilistic measure and nanospray MS3 on a hybrid quadrupole-linear ion trap

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

HLA DNA typing: past, present, and future

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Nine major HLA class I supertypes account for the vast preponderance of HLA-A and -B polymorphism

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

The sequencing-based typing tool of dbMHC: typing highly polymorphic gene sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Allele frequency net: a database and online repository for immune gene frequencies in worldwide populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Bioinformatic databases and resources in the public domain to aid HLA research

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

High-throughput, high-fidelity HLA genotyping with deep sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

HLA typing from RNA-Seq sequence reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

A survey of tools for variant analysis of next-generation genome sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Characterization of HIV-specific CD4+ T cell responses against peptides selected with broad population and pathogen coverage

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Predicting population coverage of T-cell epitope-based diagnostics and vaccines

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Derivation of HLA types from shotgun sequence datasets.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

HLA typing from RNA-seq data using hierarchical read weighting [corrected].

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8-11

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Multiple sequence alignment using ClustalW and ClustalX

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Development of an epitope conservancy analysis tool to facilitate the design of epitope-based diagnostics and vaccines

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

BlockLogo: visualization of peptide and sequence motif conservation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

The multi-epitope approach for immunotherapy for cancer: identification of several CTL epitopes from various tumor-associated antigens expressed on solid epithelial tumors.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

The Catalogue of Somatic Mutations in Cancer (COSMIC)

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

DECIPHER: Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

UniProt Knowledgebase: a hub of integrated protein data

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Regulators of apoptosis: suitable targets for immune therapy of cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Sequential application of anticancer drugs enhances cell death by rewiring apoptotic signaling networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Modulation of DNA vaccine-elicited CD8+ T-lymphocyte epitope immunodominance hierarchies

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Dual inhibition of ErbB1 (EGFR/HER1) and ErbB2 (HER2/neu).

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Targeting EGFR and HER-2 with cetuximab- and trastuzumab-mediated immunotherapy in oesophageal squamous cell carcinoma

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

The BioGRID interaction database: 2013 update

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

KEGG: kyoto encyclopedia of genes and genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Reactome: a database of reactions, pathways and biological processes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Chimeric antigen receptor-modified T cells in chronic lymphoid leukemia

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Recent advances in B-cell epitope prediction methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Evaluation of methods for the prediction of membrane spanning regions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Molecular profiling of melanoma and the evolution of patient-specific therapy

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Cancer classification using the Immunoscore: a worldwide task force

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

The immune score as a new possible approach for the classification of cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

In situ cytotoxic and memory T cells predict outcome in patients with early-stage colorectal cancer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

21 January 2018

The IMGT/HLA database

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

HemaExplorer: a Web server for easy and fast visualization of gene expression in normal and malignant hematopoiesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

Anti-tumor immunity and autoimmunity: a balancing act of regulatory T cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00262-014-1627-7

10.1007/S00262-014-1627-7

21 January 2018

Identifiers

DOI

1 reference

Dimensions Publication ID

1 September 2017

0 references

1 reference