DDX6 and its orthologs as modulators of cellular and viral RNA expression (Q38208676)

31 August 2017

DDX6 and its orthologs as modulators of cellular and viral RNA expression (English)

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31 August 2017

Dirk H Ostareck

1

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PubMed ID

24788243

31 August 2017

Isabel S Naarmann-de Vries

series ordinal

2

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PubMed ID

24788243

31 August 2017

Antje Ostareck-Lederer

series ordinal

3

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31 August 2017

30 April 2014

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Wiley interdisciplinary reviews. RNA

31 August 2017

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31 August 2017

5

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31 August 2017

5

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31 August 2017

659-678

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RNA granules: post-transcriptional and epigenetic modulators of gene expression

31 August 2017

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Building RNA-protein granules: insight from the germline

21 January 2018

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P bodies: at the crossroads of post-transcriptional pathways

21 January 2018

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Cytoplasmic mRNP granules at a glance

21 January 2018

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Eukaryotic stress granules: the ins and outs of translation

21 January 2018

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P-bodies and stress granules: possible roles in the control of translation and mRNA degradation

21 January 2018

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Comparative genomics and evolution of proteins involved in RNA metabolism

21 January 2018

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Helicase structure and mechanism

21 January 2018

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21 January 2018

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Translocation and unwinding mechanisms of RNA and DNA helicases

21 January 2018

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RNA helicases--one fold for many functions

21 January 2018

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Hepatitis C virus NS3 RNA helicase domain with a bound oligonucleotide: the crystal structure provides insights into the mode of unwinding

21 January 2018

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Crystal structure of yeast initiation factor 4A, a DEAD-box RNA helicase

21 January 2018

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Crystal structure of the human ATP-dependent splicing and export factor UAP56.

21 January 2018

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Crystal structure of a DEAD box protein from the hyperthermophile Methanococcus jannaschii

21 January 2018

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Crystal structure of UAP56, a DExD/H-box protein involved in pre-mRNA splicing and mRNA export

21 January 2018

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Structural insight of human DEAD-box protein rck/p54 into its substrate recognition with conformational changes

21 January 2018

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Crystal structure and functional analysis of DEAD-box protein Dhh1p

21 January 2018

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Crystallization and X-ray analysis of the N-terminal core domain of a tumour-associated human DEAD-box RNA helicase, rck/p54

21 January 2018

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Structural basis for the mutually exclusive anchoring of P body components EDC3 and Tral to the DEAD box protein DDX6/Me31B

21 January 2018

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Structure of the recA protein–ADP complex

21 January 2018

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Active site comparisons highlight structural similarities between myosin and other P-loop proteins

21 January 2018

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ATP-binding site of adenylate kinase: mechanistic implications of its homology with ras-encoded p21, F1-ATPase, and other nucleotide-binding proteins

21 January 2018

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Comparisons between the structures of HCV and Rep helicases reveal structural similarities between SF1 and SF2 super-families of helicases

21 January 2018

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The HRIGRXXR region of the DEAD box RNA helicase eukaryotic translation initiation factor 4A is required for RNA binding and ATP hydrolysis

21 January 2018

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Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism

21 January 2018

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DExD/H box RNA helicases: from generic motors to specific dissociation functions

21 January 2018

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Helicase motifs: the engine that powers DNA unwinding

21 January 2018

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Structural analysis of the yeast Dhh1-Pat1 complex reveals how Dhh1 engages Pat1, Edc3 and RNA in mutually exclusive interactions

21 January 2018

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The human DDX and DHX gene families of putative RNA helicases

21 January 2018

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Extended right-sided liver resection for colorectal liver metastases--impact of percutaneous portal venous embolisation.

21 January 2018

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Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families.

21 January 2018

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The DEAD-box protein family of RNA helicases

21 January 2018

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The Q motif: a newly identified motif in DEAD box helicases may regulate ATP binding and hydrolysis

21 January 2018

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Characterization of the NTPase, RNA-binding, and RNA helicase activities of the DEAH-box splicing factor Prp22.

21 January 2018

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Genome-wide comprehensive analysis of human helicases

21 January 2018

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21 January 2018

Birth of the D-E-A-D box

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Cloning of eukaryotic protein synthesis initiation factor genes: isolation and characterization of cDNA clones encoding factor eIF-4A.

21 January 2018

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Characterization of the 46,000-dalton subunit of eIF-4F.

21 January 2018

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Bidirectional RNA helicase activity of eucaryotic translation initiation factors 4A and 4F

21 January 2018

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eIF4A: the godfather of the DEAD box helicases

21 January 2018

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Topology and regulation of the human eIF4A/4G/4H helicase complex in translation initiation

21 January 2018

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Purification and characterization of a new eukaryotic protein translation factor. Eukaryotic initiation factor 4H

21 January 2018

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The DEAD-box helicase eIF4A: paradigm or the odd one out?

21 January 2018

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From unwinding to clamping - the DEAD box RNA helicase family

21 January 2018

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ATP hydrolysis is required for DEAD-box protein recycling but not for duplex unwinding

21 January 2018

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DEAD-box proteins unwind duplexes by local strand separation

21 January 2018

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Involvement of DEAD-box proteins in group I and group II intron splicing. Biochemical characterization of Mss116p, ATP hydrolysis-dependent and -independent mechanisms, and general RNA chaperone activity

21 January 2018

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RNA helicases at work: binding and rearranging

21 January 2018

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Nonspecific binding to structured RNA and preferential unwinding of an exposed helix by the CYT-19 protein, a DEAD-box RNA chaperone

21 January 2018

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RNA chaperones exist and DEAD box proteins get a life

21 January 2018

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A DEAD-box protein functions as an ATP-dependent RNA chaperone in group I intron splicing

21 January 2018

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DEAD-box proteins as RNA helicases and chaperones

21 January 2018

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The ATPase, RNA unwinding, and RNA binding activities of recombinant p68 RNA helicase

21 January 2018

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Further characterization of the helicase activity of eIF4A. Substrate specificity

21 January 2018

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Ddx42p--a human DEAD box protein with RNA chaperone activities

21 January 2018

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ATP- and ADP-dependent modulation of RNA unwinding and strand annealing activities by the DEAD-box protein DED1.

21 January 2018

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DEAD-box proteins can completely separate an RNA duplex using a single ATP.

21 January 2018

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The ATPase cycle mechanism of the DEAD-box rRNA helicase, DbpA

21 January 2018

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Pathway of ATP utilization and duplex rRNA unwinding by the DEAD-box helicase, DbpA.

21 January 2018

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Mechanism of ATP turnover inhibition in the EJC

21 January 2018

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Cloning, expression and localization of an RNA helicase gene from a human lymphoid cell line with chromosomal breakpoint 11q23.3

21 January 2018

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A yeast gene encoding a putative RNA helicase of the "DEAD"-box family

21 January 2018

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The ste13+ gene encoding a putative RNA helicase is essential for nitrogen starvation-induced G1 arrest and initiation of sexual development in the fission yeast Schizosaccharomyces pombe.

21 January 2018

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The RNA helicase DHH1 is central to the correct expression of many developmentally regulated mRNAs in trypanosomes

21 January 2018

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Regulation of sexual development of Plasmodium by translational repression

21 January 2018

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A conserved role of a DEAD box helicase in mRNA masking

21 January 2018

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A second maternally expressed Drosophila gene encodes a putative RNA helicase of the "DEAD box" family

21 January 2018

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Xp54, the Xenopus homologue of human RNA helicase p54, is an integral component of stored mRNP particles in oocytes

21 January 2018

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Cloning and expression of a murine cDNA homologous to the human RCK/P54, a lymphoma-linked chromosomal translocation junction gene on 11q23.

21 January 2018

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21 January 2018

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CGH-1 and the control of maternal mRNAs

21 January 2018

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Role of p54 RNA helicase activity and its C-terminal domain in translational repression, P-body localization and assembly

21 January 2018

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Translation repression in human cells by microRNA-induced gene silencing requires RCK/p54

21 January 2018

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Cytoplasmic foci are sites of mRNA decay in human cells

21 January 2018

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Decapping and Decay of Messenger RNA Occur in Cytoplasmic Processing Bodies

21 January 2018

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P bodies and the control of mRNA translation and degradation

21 January 2018

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Multiple processing body factors and the ARE binding protein TTP activate mRNA decapping

21 January 2018

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GW body disassembly triggered by siRNAs independently of their silencing activity.

21 January 2018

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Role of Rck-Pat1b binding in assembly of processing-bodies

21 January 2018

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Stress granule assembly is mediated by prion-like aggregation of TIA-1

21 January 2018

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Translational repression by RNA-binding protein TIAR

21 January 2018

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Processing bodies require RNA for assembly and contain nontranslating mRNAs

21 January 2018

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Analysis of P-body assembly in Saccharomyces cerevisiae

21 January 2018

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Stress granules and processing bodies are dynamically linked sites of mRNP remodeling

21 January 2018

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The translational regulator CPEB1 provides a link between dcp1 bodies and stress granules

21 January 2018

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Translationally repressed mRNA transiently cycles through stress granules during stress.

21 January 2018

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The discovery and analysis of P Bodies

21 January 2018

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21 January 2018

On track with P-bodies

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Edc3p and a glutamine/asparagine-rich domain of Lsm4p function in processing body assembly in Saccharomyces cerevisiae

21 January 2018

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A divergent Sm fold in EDC3 proteins mediates DCP1 binding and P-body targeting

21 January 2018

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P-body formation is a consequence, not the cause, of RNA-mediated gene silencing

21 January 2018

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Uncoupling stress granule assembly and translation initiation inhibition

21 January 2018

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The DEAD box helicase, Dhh1p, functions in mRNA decapping and interacts with both the decapping and deadenylase complexes.

21 January 2018

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The DEAD box protein Dhh1 stimulates the decapping enzyme Dcp1

21 January 2018

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The control of mRNA decapping and P-body formation.

21 January 2018

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General translational repression by activators of mRNA decapping

21 January 2018

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Co-translational mRNA decay in Saccharomyces cerevisiae

21 January 2018

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The DEAD-box protein Dhh1 promotes decapping by slowing ribosome movement

21 January 2018

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The RNA helicase Dhh1p cooperates with Rbp1p to promote porin mRNA decay via its non-conserved C-terminal domain

21 January 2018

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A role for Q/N-rich aggregation-prone regions in P-body localization.

21 January 2018

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Multiple binding of repressed mRNAs by the P-body protein Rck/p54.

21 January 2018

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Identification of translational regulation target genes during filamentous growth in Saccharomyces cerevisiae: regulatory role of Caf20 and Dhh1.

21 January 2018

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A novel inhibitor of cap-dependent translation initiation in yeast: p20 competes with eIF4G for binding to eIF4E.

21 January 2018

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The DEAD-box RNA helicase, Dhh1, functions in mating by regulating Ste12 translation in Saccharomyces cerevisiae

21 January 2018

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The yeast RNA-binding protein Rbp1p modifies the stability of mitochondrial porin mRNA.

21 January 2018

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Proteome analysis of separated male and female gametocytes reveals novel sex-specific Plasmodium biology

21 January 2018

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Universal features of post-transcriptional gene regulation are critical for Plasmodium zygote development

21 January 2018

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Plasmodium falciparum DOZI, an RNA helicase interacts with eIF4E

21 January 2018

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21 January 2018

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Protection of specific maternal messenger RNAs by the P body protein CGH-1 (Dhh1/RCK) during Caenorhabditis elegans oogenesis

21 January 2018

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A conserved RNA-protein complex component involved in physiological germline apoptosis regulation in C. elegans

21 January 2018

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A complex containing the Sm protein CAR-1 and the RNA helicase CGH-1 is required for embryonic cytokinesis in Caenorhabditis elegans

21 January 2018

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Maternal mRNAs are regulated by diverse P body-related mRNP granules during early Caenorhabditis elegans development

21 January 2018

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Processing bodies and germ granules are distinct RNA granules that interact in C. elegans embryos

21 January 2018

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Requirement for P granules and meiosis for accumulation of the germline RNA helicase CGH-1.

21 January 2018

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nhl-2 Modulates microRNA activity in Caenorhabditis elegans

21 January 2018

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TRIM-NHL proteins take on miRNA regulation.

21 January 2018

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Staufen- and FMRP-containing neuronal RNPs are structurally and functionally related to somatic P bodies

21 January 2018

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Isolation of new polar granule components in Drosophila reveals P body and ER associated proteins

21 January 2018

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The 5'-3' exoribonuclease Pacman is required for normal male fertility and is dynamically localized in cytoplasmic particles in Drosophila testis cells

21 January 2018

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21 January 2018

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The product of the Drosophila gene vasa is very similar to eukaryotic initiation factor-4A.

21 January 2018

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VASA mediates translation through interaction with a Drosophila yIF2 homolog.

21 January 2018

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Polarization of both major body axes in Drosophila by gurken-torpedo signalling.

21 January 2018

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The Drosophila dorsoventral patterning gene gurken produces a dorsally localized RNA and encodes a TGF alpha-like protein

21 January 2018

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cornichon and the EGF receptor signaling process are necessary for both anterior-posterior and dorsal-ventral pattern formation in Drosophila

21 January 2018

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Interaction with eIF5B is essential for Vasa function during development.

21 January 2018

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The DEAD-box helicase Vasa: evidence for a multiplicity of functions in RNA processes and developmental biology

21 January 2018

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CPEB interacts with an ovary-specific eIF4E and 4E-T in early Xenopus oocytes.

21 January 2018

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RAP55, a cytoplasmic mRNP component, represses translation in Xenopus oocytes

21 January 2018

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The active form of Xp54 RNA helicase in translational repression is an RNA-mediated oligomer

21 January 2018

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Unravelling the ultrastructure of stress granules and associated P-bodies in human cells.

21 January 2018

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GW182 is critical for the stability of GW bodies expressed during the cell cycle and cell proliferation

21 January 2018

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CPEB: a life in translation

21 January 2018

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Isolation of a ribonucleoprotein complex involved in mRNA localization in Drosophila oocytes

21 January 2018

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mRNA silencing in erythroid differentiation: hnRNP K and hnRNP E1 regulate 15-lipoxygenase translation from the 3' end.

21 January 2018

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Lipoxygenase mRNA silencing in erythroid differentiation: The 3'UTR regulatory complex controls 60S ribosomal subunit joining

21 January 2018

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mRNA silencing in human erythroid cell maturation: heterogeneous nuclear ribonucleoprotein K controls the expression of its regulator c-Src

21 January 2018

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DDX6 recruits translational silenced human reticulocyte 15-lipoxygenase mRNA to RNP granules

21 January 2018

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Precision mechanics with multifunctional tools: how hnRNP K and hnRNPs E1/E2 contribute to post-transcriptional control of gene expression in hematopoiesis

21 January 2018

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Roquin binds inducible costimulator mRNA and effectors of mRNA decay to induce microRNA-independent post-transcriptional repression

21 January 2018

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AU-rich-element-dependent translation repression requires the cooperation of tristetraprolin and RCK/P54.

21 January 2018

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Expression analyses identify MLL as a prominent target of 11q23 amplification and support an etiologic role for MLL gain of function in myeloid malignancies

21 January 2018

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Cytogenetic, molecular genetic, and clinical characteristics of acute myeloid leukemia with a complex karyotype

21 January 2018

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The genomic relationship between primary breast carcinomas and their nodal metastases.

21 January 2018

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Associations of high-grade glioma with glioma risk alleles and histories of allergy and smoking

21 January 2018

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t(11;14)(q23;q32) involving IGH and DDX6 in nodal marginal zone lymphoma

21 January 2018

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Overexpression of rck/p54, a DEAD box protein, in human colorectal tumours

21 January 2018

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Perturbations of RNA helicases in cancer.

21 January 2018

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Knockdown of RCK/p54 expression by RNAi inhibits proliferation of human colorectal cancer cells in vitro and in vivo

21 January 2018

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Co-overexpression of DEAD box protein rck/p54 and c-myc protein in human colorectal adenomas and the relevance of their expression in cultured cell lines

21 January 2018

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A tumour-associated DEAD-box protein, rck/p54 exhibits RNA unwinding activity toward c-myc RNAs in vitro

21 January 2018

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Alternative translation of the proto-oncogene c-myc by an internal ribosome entry site.

21 January 2018

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Internal ribosome entry sites in eukaryotic mRNA molecules

21 January 2018

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The current status of vertebrate cellular mRNA IRESs

21 January 2018

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Identification of DEAD-box RNA helicase 6 (DDX6) as a cellular modulator of vascular endothelial growth factor expression under hypoxia

21 January 2018

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MicroRNA 130 family regulates the hypoxia response signal through the P-body protein DDX6.

21 January 2018

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A microRNA signature of hypoxia

21 January 2018

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Modulation of hepatitis C virus RNA accumulation and translation by DDX6 and miR-122 are mediated by separate mechanisms

21 January 2018

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Translation and replication of hepatitis C virus genomic RNA depends on ancient cellular proteins that control mRNA fates

21 January 2018

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DDX6 (Rck/p54) is required for efficient hepatitis C virus replication but not for internal ribosome entry site-directed translation

21 January 2018

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Modulation of hepatitis C virus RNA abundance and virus release by dispersion of processing bodies and enrichment of stress granules

21 January 2018

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Quantitative mass spectrometry of DENV-2 RNA-interacting proteins reveals that the DEAD-box RNA helicase DDX6 binds the DB1 and DB2 3' UTR structures

21 January 2018

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Cellular microRNA and P bodies modulate host-HIV-1 interactions

21 January 2018

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HIV-1 Gag co-opts a cellular complex containing DDX6, a helicase that facilitates capsid assembly

21 January 2018

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The DEAD-box RNA helicase DDX6 is required for efficient encapsidation of a retroviral genome

21 January 2018

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MicroRNA-dependent localization of targeted mRNAs to mammalian P-bodies

21 January 2018

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Inhibition of translational initiation by Let-7 MicroRNA in human cells

21 January 2018

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Argonaute 2/RISC resides in sites of mammalian mRNA decay known as cytoplasmic bodies

21 January 2018

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miRISC recruits decapping factors to miRNA targets to enhance their degradation

21 January 2018

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Relief of microRNA-mediated translational repression in human cells subjected to stress

21 January 2018

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A brain-specific microRNA regulates dendritic spine development

21 January 2018

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Global analysis of yeast mRNPs

21 January 2018

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Intermolecular interactions within the abundant DEAD-box protein Dhh1 regulate its activity in vivo

21 January 2018

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Translation repressors, an RNA helicase, and developmental cues control RNP phase transitions during early development.

21 January 2018

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The DExH protein NPH-II is a processive and directional motor for unwinding RNA

21 January 2018

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The DEAD-box protein Ded1 unwinds RNA duplexes by a mode distinct from translocating helicases

21 January 2018

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21 January 2018

Identifiers

DOI

10.1002/WRNA.1237

1 reference

31 August 2017

1 reference

PubMed ID

24788243