The private life of environmental bacteria: pollutant biodegradation at the single cell level (Q38171535)

30 August 2017

The private life of environmental bacteria: pollutant biodegradation at the single cell level (English)

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30 August 2017

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4

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30 August 2017

Rafael Silva-Rocha

2

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Pablo I Nikel

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Pablo Iván Nikel

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1

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Ilaria Benedetti

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3

object named as

Ilaria Benedetti

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30 August 2017

16 January 2014

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Environmental Microbiology

30 August 2017

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30 August 2017

16

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30 August 2017

628-642

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30 August 2017

3

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Microbial individuality in the natural environment

30 August 2017

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Senescence in a bacterium with asymmetric division

21 January 2018

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https://api.crossref.org/works/10.1111%2F1462-2920.12360

Mass spectrometric method for analyzing metabolites in yeast with single cell sensitivity

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Optical trapping for analytical biotechnology

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Bacterial persistence as a phenotypic switch

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Experimental evolution of bet hedging.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Quantitative, non-disruptive monitoring of transcription in single cells with a broad-host range GFP-luxCDABE dual reporter system

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Applications of flow cytometry in environmental microbiology and biotechnology

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Single-cell microbiology: tools, technologies, and applications

21 January 2018

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https://api.crossref.org/works/10.1111%2F1462-2920.12360

Architecture-dependent noise discriminates functionally analogous differentiation circuits.

21 January 2018

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https://api.crossref.org/works/10.1111%2F1462-2920.12360

Competition between species can stabilize public-goods cooperation within a species

21 January 2018

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https://api.crossref.org/works/10.1111%2F1462-2920.12360

Green fluorescent protein as a marker for gene expression

21 January 2018

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https://api.crossref.org/works/10.1111%2F1462-2920.12360

Recent advances in laser tweezers Raman spectroscopy (LTRS) for label-free analysis of single cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

The Entner-Doudoroff pathway empowers Pseudomonas putida KT2440 with a high tolerance to oxidative stress

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

A Tn7-based broad-range bacterial cloning and expression system

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Programming gene expression with combinatorial promoters

21 January 2018

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https://api.crossref.org/works/10.1111%2F1462-2920.12360

A synthetic three-color scaffold for monitoring genetic regulation and noise

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Use of flow cytometric methods for single-cell analysis in environmental microbiology

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Construction of a broad-host-range Tn7-based vector for single-copy P(BAD)-controlled gene expression in gram-negative bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Life, death, and in-between: meanings and methods in microbiology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Microbial heterogeneity affects bioprocess robustness: dynamic single-cell analysis contributes to understanding of microbial populations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Application of atomic force microscopy in bacterial research

21 January 2018

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https://api.crossref.org/works/10.1111%2F1462-2920.12360

Atomic force microscopy: a nanoscopic view of microbial cell surfaces.

21 January 2018

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https://api.crossref.org/works/10.1111%2F1462-2920.12360

21 January 2018

Bistability in bacteria

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https://api.crossref.org/works/10.1111%2F1462-2920.12360

Stochastic gene expression in a single cell

21 January 2018

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https://api.crossref.org/works/10.1111%2F1462-2920.12360

Optical tweezers applied to a microfluidic system

21 January 2018

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https://api.crossref.org/works/10.1111%2F1462-2920.12360

Sorting out bacterial viability with optical tweezers

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Molecular and functional analysis of the TOL plasmid pWWO from Pseudomonas putida and cloning of genes for the entire regulated aromatic ring meta cleavage pathway

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Picoliter nDEP traps enable time-resolved contactless single bacterial cell analysis in controlled microenvironments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

A bottom-up approach to gene regulation.

21 January 2018

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https://api.crossref.org/works/10.1111%2F1462-2920.12360

Raman microspectroscopy reveals long-term extracellular activity of Chlamydiae

21 January 2018

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https://api.crossref.org/works/10.1111%2F1462-2920.12360

Playing Dr Jekyll and Mr Hyde: combined mechanisms of phase variation in bacteria

21 January 2018

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https://api.crossref.org/works/10.1111%2F1462-2920.12360

Single cell metabolomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Single-cell Raman spectral profiles of Pseudomonas fluorescens SBW25 reflects in vitro and in planta metabolic history.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Pseudomonas fluorescens SBW25 biofilm and planktonic cells have differentiable Raman spectral profiles.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Raman tweezers sorting of single microbial cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Resolving genetic functions within microbial populations: in situ analyses using rRNA and mRNA stable isotope probing coupled with single-cell raman-fluorescence in situ hybridization.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Mass spectrometry-based metabolomics of single yeast cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Expression of the regulatory gene xylS on the TOL plasmid is positively controlled by the xylR gene product

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Single-cell analysis and isolation for microbiology and biotechnology: methods and applications.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Evolution of catabolic pathways for synthetic compounds: bacterial pathways for degradation of 2,4-dinitrotoluene and nitrobenzene

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Stochasticity in gene expression: from theories to phenotypes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Real-time detection of actively metabolizing microbes by redox sensing as applied to methylotroph populations in Lake Washington.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Homogeneous expression of the P(BAD) promoter in Escherichia coli by constitutive expression of the low-affinity high-capacity AraE transporter

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

In situ identification and N₂ and C fixation rates of uncultivated cyanobacteria populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Seeing things: from microcinematography to live cell imaging

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Engineering input/output nodes in prokaryotic regulatory circuits

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

The robustness continuum.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Simultaneous analysis of microbial identity and function using NanoSIMS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

The role of physiological heterogeneity in microbial population behavior.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Using movies to analyse gene circuit dynamics in single cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Bistability in the Bacillus subtilis K-state (competence) system requires a positive feedback loop

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Experimental evolution of selfish policing in social bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

pTn5cat: a Tn5-derived genetic element to facilitate insertion mutagenesis, promoter probing, physical mapping, cloning, and marker exchange in phytopathogenic and other gram-negative bacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

pBAM1: an all-synthetic genetic tool for analysis and construction of complex bacterial phenotypes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Where microbiology meets microengineering: design and applications of reporter bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Applications of fluorescence microscopy to single bacterial cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

The Crc global regulator inhibits the Pseudomonas putida pWW0 toluene/xylene assimilation pathway by repressing the translation of regulatory and structural genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Detecting metabolic activities in single cells, with emphasis on nanoSIMS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Ultrasensitivity of the Bacillus subtilis sporulation decision.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Analysis of fluorescent reporters indicates heterogeneity in glucose uptake and utilization in clonal bacterial populations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

ENZYME INDUCTION AS AN ALL-OR-NONE PHENOMENON

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Multistability in the lactose utilization network of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Tn7 recognizes transposition target structures associated with DNA replication using the DNA-binding protein TnsE.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Tn7: smarter than we thought

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Industrial biotechnology of Pseudomonas putida and related species

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Adaptive radiation in a heterogeneous environment

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

The evolutionary emergence of stochastic phenotype switching in bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Transcriptional control of the Pseudomonas TOL plasmid catabolic operons is achieved through an interplay of host factors and plasmid-encoded regulators

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Gene regulation at the single-cell level

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Culture history and population heterogeneity as determinants of bacterial adaptation: the adaptomics of a single environmental transition

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Granular sludge formation in upflow anaerobic sludge blanket (UASB) reactors.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Vectors to express foreign genes and techniques to monitor gene expression in Pseudomonads

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

THINKING ABOUT BACTERIAL POPULATIONS AS MULTICELLULAR ORGANISMS

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Applications and perspectives of multi-parameter flow cytometry to microbial biofuels production processes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Noise and robustness in prokaryotic regulatory networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Stochasticity of TOL plasmid catabolic promoters sets a bimodal expression regime in Pseudomonas putida mt-2 exposed to m-xylene.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

The TOL network of Pseudomonas putida mt-2 processes multiple environmental inputs into a narrow response space

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

A GFP-lacZ bicistronic reporter system for promoter analysis in environmental gram-negative bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Engineering multicellular logic in bacteria with metabolic wires

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

The logic layout of the TOL network of Pseudomonas putida pWW0 plasmid stems from a metabolic amplifier motif (MAM) that optimizes biodegradation of m-xylene

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

The Standard European Vector Architecture (SEVA): a coherent platform for the analysis and deployment of complex prokaryotic phenotypes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Decoding the genetic networks of environmental bacteria: regulatory moonlighting of the TOL system of Pseudomonas putida mt-2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Phenotypic variation in bacteria: the role of feedback regulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Aging and death in an organism that reproduces by morphologically symmetric division

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Bacterial transcriptional regulators for degradation pathways of aromatic compounds

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Carbon-13 labelling strategy for studying the ATP metabolism in individual yeast cells by micro-arrays for mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Bet-hedging and epigenetic inheritance in bacterial cell development

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Bistability, epigenetics, and bet-hedging in bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Comprehensive mutation identification in an evolved bacterial cooperator and its cheating ancestor

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Co-swarming and local collapse: quorum sensing conveys resilience to bacterial communities by localizing cheater mutants in Pseudomonas aeruginosa

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Single-cell ecophysiology of microbes as revealed by Raman microspectroscopy or secondary ion mass spectrometry imaging

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Bacterial luciferase reporters: the Swiss army knife of molecular biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Towards a fast, high specific and reliable discrimination of bacteria on strain level by means of SERS in a microfluidic device

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

The evolution of pathways for aromatic hydrocarbon oxidation in Pseudomonas.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Measuring single-cell gene expression dynamics in bacteria using fluorescence time-lapse microscopy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

A comprehensive library of fluorescent transcriptional reporters for Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Optimal Mixed Strategies in Stochastic Environments

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Implantation of unmarked regulatory and metabolic modules in Gram-negative bacteria with specialised mini-transposon delivery vectors

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

Evolution of species interactions in a biofilm community

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12360

21 January 2018

Identifiers

DOI

10.1111/1462-2920.12360

1 reference

30 August 2017

1 reference

PubMed ID

24341371