A survey on annotation tools for the biomedical literature (Q38068801)

28 August 2017

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title

A survey on annotation tools for the biomedical literature (English)

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28 August 2017

Mariana Neves

1

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Ulf Leser

series ordinal

2

object named as

Ulf Leser

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28 August 2017

18 December 2012

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Briefings in Bioinformatics

28 August 2017

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28 August 2017

15

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28 August 2017

2

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28 August 2017

327-340

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What makes a gene name? Named entity recognition in the biomedical literature.

28 August 2017

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https://api.crossref.org/works/10.1093%2FBIB%2FBBS084

Event extraction for systems biology by text mining the literature

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBS084

Extracting interactions between proteins from the literature.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS084

A comprehensive benchmark of kernel methods to extract protein-protein interactions from literature

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS084

Complex event extraction at PubMed scale

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS084

GENIA corpus--semantically annotated corpus for bio-textmining.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS084

LINNAEUS: a species name identification system for biomedical literature

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS084

Detection of IUPAC and IUPAC-like chemical names

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS084

Corpus annotation for mining biomedical events from literature

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS084

Argo: an integrative, interactive, text mining-based workbench supporting curation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS084

IntAct: an open source molecular interaction database

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS084

Facts from text: can text mining help to scale-up high-quality manual curation of gene products with ontologies?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS084

Text mining and manual curation of chemical-gene-disease networks for the comparative toxicogenomics database (CTD)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS084

Textpresso: an ontology-based information retrieval and extraction system for biological literature

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS084

Text mining for the biocuration workflow

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS084

The biomedical discourse relation bank

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS084

Natural language processing in aid of FlyBase curators

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS084

GOAnnotator: linking protein GO annotations to evidence text

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS084

PreBIND and Textomy--mining the biomedical literature for protein-protein interactions using a support vector machine

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS084

@Note: a workbench for biomedical text mining

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS084

Semantic annotation of biological concepts interplaying microbial cellular responses

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS084

Stringent response of Escherichia coli: revisiting the bibliome using literature mining.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS084

U-Compare: share and compare text mining tools with UIMA

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS084

Collaborative text-annotation resource for disease-centered relation extraction from biomedical text

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS084

A public resource facilitating clinical use of genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS084

OrganismTagger: detection, normalization and grounding of organism entities in biomedical documents

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS084

Concept annotation in the CRAFT corpus

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS084

Developing a standard for de-identifying electronic patient records written in Swedish: precision, recall and F-measure in a manual and computerized annotation trial.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS084

Understanding PubMed user search behavior through log analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS084

Semi-automatic semantic annotation of PubMed queries: a study on quality, efficiency, satisfaction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS084

OpenDMAP: an open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS084

MyMiner: a web application for computer-assisted biocuration and text annotation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS084

How to link ontologies and protein-protein interactions to literature: text-mining approaches and the BioCreative experience

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS084

Construction of an annotated corpus to support biomedical information extraction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS084

Identifying gene-specific variations in biomedical text.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS084

Biomedical word sense disambiguation with ontologies and metadata: automation meets accuracy

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS084

Enriching a biomedical event corpus with meta-knowledge annotation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS084

The structural and content aspects of abstracts versus bodies of full text journal articles are different

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBS084

21 January 2018

Identifiers

DOI

10.1093/BIB/BBS084

1 reference

28 August 2017

journals/bib/NevesL14

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

PubMed ID

23255168