Corpus annotation for mining biomedical events from literature (Q21284210)

Dimensions

18 August 2022

2

Tomoko Ohta

Tomoko

Ohta

1 reference

Dimensions

18 August 2022

Jin-Dong Kim

1

Jin-Dong

Kim

1 reference

Dimensions

1039070712

Creative Commons Attribution 2.0 Generic

18 August 2022

language of work or name

English

0 references

publication date

2008

0 references

published in

BMC Bioinformatics

0 references

volume

9

0 references

page(s)

10

0 references

issue

1

0 references

copyright license

start time

8 January 2008

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2105-9-10

0 references

cites work

Pathguide: a pathway resource list

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267702

19 March 2017

Which gene did you mean?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267702

Relations in biomedical ontologies

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267702

PASBio: predicate-argument structures for event extraction in molecular biology

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267702

Content-rich biological network constructed by mining PubMed abstracts

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267702

Gene ontology: tool for the unification of biology

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267702

Evolving a lingua franca and associated software infrastructure for computational systems biology: the Systems Biology Markup Language (SBML) project

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267702

Building an abbreviation dictionary using a term recognition approach

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267702

Implementing the iHOP concept for navigation of biomedical literature

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267702

The Unified Medical Language System (UMLS): integrating biomedical terminology

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267702

Extracting semantic predications from Medline citations for pharmacogenomics

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267702

BioInfer: a corpus for information extraction in the biomedical domain

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267702

Benchmarking natural-language parsers for biological applications using dependency graphs.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267702

An environment for relation mining over richly annotated corpora: the case of GENIA.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267702

Lexical adaptation of link grammar to the biomedical sublanguage: a comparative evaluation of three approaches

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267702

Text mining and its potential applications in systems biology

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267702

New directions in biomedical text annotation: definitions, guidelines and corpus construction

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267702

Towards semantic role labeling & IE in the medical literature.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267702

Recognition of protein/gene names from text using an ensemble of classifiers

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267702

GENETAG: a tagged corpus for gene/protein named entity recognition

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267702

ProMiner: rule-based protein and gene entity recognition

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267702

ABNER: an open source tool for automatically tagging genes, proteins and other entity names in text

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267702

Extracting human protein interactions from MEDLINE using a full-sentence parser

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267702

Mining the biomedical literature in the genomic era: an overview

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267702

Adding a medical lexicon to an English Parser

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267702

Extraction of protein interaction information from unstructured text using a context-free grammar

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267702

Kinase pathway database: an integrated protein-kinase and NLP-based protein-interaction resource

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267702

Accomplishments and challenges in literature data mining for biology

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267702

LMP1 structure and signal transduction

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267702

Automatic extraction of biological information from scientific text: protein-protein interactions

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267702

Extraction of gene-disease relations from Medline using domain dictionaries and machine learning.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267702

POSBIOTM-NER: a trainable biomedical named-entity recognition system.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267702

Improving the performance of dictionary-based approaches in protein name recognition.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267702

MedScan, a natural language processing engine for MEDLINE abstracts.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267702

GENIA corpus--semantically annotated corpus for bio-textmining.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267702

GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267702

Event extraction from biomedical papers using a full parser.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267702

Automated extraction of information on protein-protein interactions from the biological literature.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2267702

BioThesaurus: a web-based thesaurus of protein and gene names

29 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18182099

12 December 2020

inferred from PubMed ID database lookup

Fish oil, Raynaud's syndrome, and undiscovered public knowledge

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18182099

12 December 2020

inferred from PubMed ID database lookup

Thesaurus or Logical Ontology, Which One Do We Need for Text Mining?

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-9-10

7 January 2021

Extracting biochemical interactions from MEDLINE using a link grammar parser

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-9-10

7 January 2021

Introduction to the bio-entity recognition task at JNLPBA

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-9-10

7 January 2021

Corpus design for biomedical natural language processing

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-9-10

7 January 2021

Identifiers

DOI

10.1186/1471-2105-9-10

1 reference

312017

DBLP publication ID

journals/bmcbi/KimOT08

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1039070712

0 references

312017

1 reference

0 references

1 reference

1 reference