Glycocapture-based proteomics for secretome analysis (Q38063829)

28 August 2017

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title

Glycocapture-based proteomics for secretome analysis (English)

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28 August 2017

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Zon W Lai

1

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PubMed ID

23197367

28 August 2017

Edouard C Nice

series ordinal

2

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PubMed ID

23197367

28 August 2017

Oliver Schilling

series ordinal

3

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28 August 2017

14 January 2013

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28 August 2017

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28 August 2017

13

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28 August 2017

3-4

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28 August 2017

512-525

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Secretome proteomics for discovery of cancer biomarkers

28 August 2017

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Proteomic profiling of secretome and adherent plasma membranes from distinct mammary epithelial cell subpopulations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Harnessing the mesenchymal stem cell secretome for the treatment of cardiovascular disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Obesidomics: contribution of adipose tissue secretome analysis to obesity research

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Integrated proteomic profiling of cell line conditioned media and pancreatic juice for the identification of pancreatic cancer biomarkers

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Identification of five candidate lung cancer biomarkers by proteomics analysis of conditioned media of four lung cancer cell lines

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Tumour markers in colorectal cancer: European Group on Tumour Markers (EGTM) guidelines for clinical use.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Elucidation of a protein signature discriminating six common types of adenocarcinoma

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Perspectives on the significance of altered glycosylation of glycoproteins in cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Altered glycosylation of proteins in cancer: what is the potential for new anti-tumour strategies

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Systems biology, proteomics, and the future of health care: toward predictive, preventative, and personalized medicine

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Clinical usefulness of carbohydrate antigen 19-9 as a screening test for pancreatic cancer in an asymptomatic population

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Clinical utility of biochemical markers in colorectal cancer: European Group on Tumour Markers (EGTM) guidelines.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Adult cancer survivors: how are they faring?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Prostate specific antigen as a clinical biomarker for prostate cancer: what's the take home message?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Protein microarrays and proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Proteomic applications for the early detection of cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Mass spectrometry-based biomarker discovery: toward a global proteome index of individuality

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Proteomics strategies for target identification and biomarker discovery in cancer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Mass spectrometry-based proteomics using Q Exactive, a high-performance benchtop quadrupole Orbitrap mass spectrometer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Performance characteristics of a new hybrid quadrupole time-of-flight tandem mass spectrometer (TripleTOF 5600).

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Instruments and methods in proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Global survey of organ and organelle protein expression in mouse: combined proteomic and transcriptomic profiling

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

The human urinary proteome contains more than 1500 proteins, including a large proportion of membrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Proteomics of colorectal cancer: overview of discovery studies and identification of commonly identified cancer-associated proteins and candidate CRC serum markers.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Extended Range Proteomic Analysis (ERPA): a new and sensitive LC-MS platform for high sequence coverage of complex proteins with extensive post-translational modifications-comprehensive analysis of beta-casein and epidermal growth factor receptor (E

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Function and 3D structure of the N-glycans on glycoproteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Automated glycopeptide analysis--review of current state and future directions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Glycoscience aids in biomarker discovery

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Emerging technologies for making glycan-defined glycoproteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

A genetic approach to Mammalian glycan function

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Protein glycosylation: nature, distribution, enzymatic formation, and disease implications of glycopeptide bonds

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

UniPep--a database for human N-linked glycosites: a resource for biomarker discovery

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Use of multidimensional separation protocols for the purification of trace components in complex biological samples for proteomics analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

A novel four-dimensional strategy combining protein and peptide separation methods enables detection of low-abundance proteins in human plasma and serum proteomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Combining results from lectin affinity chromatography and glycocapture approaches substantially improves the coverage of the glycoproteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Tools for glycoproteomic analysis: size exclusion chromatography facilitates identification of tryptic glycopeptides with N-linked glycosylation sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Metabolic labeling of glycans with azido sugars for visualization and glycoproteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Hydroxyl radical and singlet oxygen production and DNA damage induced by carcinogenic metal compounds and hydrogen peroxide

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Copper-free click chemistry for dynamic in vivo imaging

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Cell surface engineering by a modified Staudinger reaction

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Imaging cell surface glycans with bioorthogonal chemical reporters

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Azide-alkyne coupling: a powerful reaction for bioconjugate chemistry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Bioconjugation by copper(I)-catalyzed azide-alkyne [3 + 2] cycloaddition

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

A stepwise huisgen cycloaddition process: copper(I)-catalyzed regioselective "ligation" of azides and terminal alkynes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

A Comparative Study of Bioorthogonal Reactions with Azides

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Secretome protein enrichment identifies physiological BACE1 protease substrates in neurons

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

The influence of periodate oxidation on monoclonal antibody avidity and immunoreactivity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Nucleophilic catalysis of hydrazone formation and transimination: implications for dynamic covalent chemistry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

High throughput quantitative analysis of serum proteins using glycopeptide capture and liquid chromatography mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Mapping tissue-specific expression of extracellular proteins using systematic glycoproteomic analysis of different mouse tissues

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Identification and functional characterization of pVHL-dependent cell surface proteins in renal cell carcinoma

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Proteomic analysis reveals drug accessible cell surface N-glycoproteins of primary and established glioblastoma cell lines

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Using lectins to harvest the plasma/serum glycoproteome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Use of lectins in analysis of glycoconjugates

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Affinity chromatography with monolithic capillary columns. II. Polymethacrylate monoliths with immobilized lectins for the separation of glycoconjugates by nano-liquid affinity chromatography

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Combination of abundant protein depletion and multi-lectin affinity chromatography (M-LAC) for plasma protein biomarker discovery.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Automated platform for fractionation of human plasma glycoproteome in clinical proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Lectin microarrays identify cell-specific and functionally significant cell surface glycan markers.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Specific lectin biomarkers for isolation of human pluripotent stem cells identified through array-based glycomic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Proteomic approaches to study structure, functions and toxicity of legume seeds lectins. Perspectives for the assessment of food quality and safety

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Sample preparation and digestion for proteomic analyses using spin filters

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Precision mapping of an in vivo N-glycoproteome reveals rigid topological and sequence constraints.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Antibody-lectin sandwich arrays for biomarker and glycobiology studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Application of WGA lectin staining for visualization of the connective tissue in skeletal muscle, bone, and ligament/tendon studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Quantitative site-specific analysis of protein glycosylation by LC-MS using different glycopeptide-enrichment strategies

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

A novel method for the simultaneous enrichment, identification, and quantification of phosphopeptides and sialylated glycopeptides applied to a temporal profile of mouse brain development

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Determination of N-glycosylation sites and site heterogeneity in glycoproteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Site determination of protein glycosylation based on digestion with immobilized nonspecific proteases and Fourier transform ion cyclotron resonance mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Factors that influence fragmentation behavior of N-linked glycopeptide ions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Exploiting differential dissociation chemistries of O-linked glycopeptide ions for the localization of mucin-type protein glycosylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Analytical performance of immobilized pronase for glycopeptide footprinting and implications for surpassing reductionist glycoproteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Simultaneous and extensive site-specific N- and O-glycosylation analysis in protein mixtures

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Assigning N-glycosylation sites of glycoproteins using LC/MSMS in conjunction with endo-M/exoglycosidase mixture

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Chemical and enzymatic N-glycan release comparison for N-glycan profiling of monoclonal antibodies expressed in plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Chemical deamidation: a common pitfall in large-scale N-linked glycoproteomic mass spectrometry-based analyses.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Proteomic analysis of high-grade dysplastic cervical cells obtained from ThinPrep slides using laser capture microdissection and mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Identification of proteolytic cleavage sites by quantitative proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Multiple reaction monitoring for quantitative biomarker analysis in proteomics and metabolomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Quantitative protease cleavage site profiling using tandem-mass-tag labeling and LC-MALDI-TOF/TOF MS/MS analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Ionic liquid matrices for MALDI-TOF-MS analysis of intact glycoproteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Metabolic labeling of proteins for proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

In vivo quantitative proteomics: the SILAC mouse.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

The subunit structure and dynamics of the 20S proteasome in chicken skeletal muscle

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Dynamic interplay between O-linked N-acetylglucosaminylation and glycogen synthase kinase-3-dependent phosphorylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

A novel strategy for quantitative proteomics using isotope-coded protein labels

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

How industry is approaching the search for new diagnostic markers and biomarkers

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Is proteomics heading in the wrong direction?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Quantification of C-reactive protein in the serum of patients with rheumatoid arthritis using multiple reaction monitoring mass spectrometry and 13C-labeled peptide standards

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Accurate inclusion mass screening: a bridge from unbiased discovery to targeted assay development for biomarker verification

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Highly multiplexed targeted proteomics using precise control of peptide retention time.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

GlycoFish: a database of zebrafish N-linked glycoproteins identified using SPEG method coupled with LC/MS

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

GlycoFly: a database of Drosophila N-linked glycoproteins identified using SPEG--MS techniques

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Options and considerations when selecting a quantitative proteomics strategy

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Mesenchymal stem cells in the umbilical cord: phenotypic characterization, secretome and applications in central nervous system regenerative medicine

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Shotgun metaproteomics of the human distal gut microbiota

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Highly selective enrichment of phosphorylated peptides using titanium dioxide

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Exploring the Sialiome Using Titanium Dioxide Chromatography and Mass Spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Purification and Identification ofO-GlcNAc-Modified Peptides Using Phosphate-Based Alkyne CLICK Chemistry in Combination with Titanium Dioxide Chromatography and Mass Spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Functional and quantitative proteomics using SILAC

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

An Enzymatic Deglycosylation Scheme Enabling Identification of Core FucosylatedN-Glycans and O-Glycosylation Site Mapping of Human Plasma Proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Protein Turnover Methods in Single-Celled Organisms: Dynamic SILAC

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

Multiplexed absolute quantification for proteomics using concatenated signature peptides encoded by QconCAT genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201200414

21 January 2018

Identifiers

DOI

10.1002/PMIC.201200414

1 reference

28 August 2017

1 reference

PubMed ID

23197367