Mass spectrometry-based proteomics strategies for protease cleavage site identification. (Q37975970)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22246699%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

title

Mass spectrometry-based proteomics strategies for protease cleavage site identification (English)

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20 January 2020

2

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20 January 2020

author name string

Bart H J van den Berg

series ordinal

1

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20 January 2020

publication date

19 January 2012

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20 January 2020

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volume

12

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20 January 2020

page(s)

516-529

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issue

4-5

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Proteases in cutaneous malignant melanoma: relevance as biomarker and therapeutic target.

20 January 2020

cites work

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Matrix metalloproteinases: regulators of the tumor microenvironment

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Critical role of the disintegrin metalloprotease ADAM17 for intestinal inflammation and regeneration in mice

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Neurovascular dysfunction, inflammation and endothelial activation: implications for the pathogenesis of Alzheimer's disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Distinct roles for Arabidopsis SUMO protease ESD4 and its closest homolog ELS1

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Glycosaminoglycan-mediated loss of cathepsin K collagenolytic activity in MPS I contributes to osteoclast and growth plate abnormalities

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

The inflammasome regulatory pathway and infections: role in pathophysiology and clinical implications

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Endolysosomal proteases and their inhibitors in immunity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

MEROPS: the peptidase database

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Targeting proteases: successes, failures and future prospects

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Towards third generation matrix metalloproteinase inhibitors for cancer therapy

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Cathepsin K inhibitors: a novel target for osteoporosis therapy

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

The "A Disintegrin And Metalloproteases" ADAM10 and ADAM17: novel drug targets with therapeutic potential?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Metadegradomics: toward in vivo quantitative degradomics of proteolytic post-translational modifications of the cancer proteome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Methods for the proteomic identification of protease substrates

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Protease proteomics: revealing protease in vivo functions using systems biology approaches

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

MS-driven protease substrate degradomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Current strategies for probing substrate specificity of proteases

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Proteomic profiling of proteases: tools for granzyme degradomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

On the size of the active site in proteases. I. Papain

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Amyloid metabolism and secretases in Alzheimer's disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Species specificity of ADAM10 and ADAM17 proteins in interleukin-6 (IL-6) trans-signaling and novel role of ADAM10 in inducible IL-6 receptor shedding

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Thrombin induces broad spectrum proteolysis in human serum samples

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Does trypsin cut before proline?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Proteome-derived, database-searchable peptide libraries for identifying protease cleavage sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Protease specificity determination by using cellular libraries of peptide substrates (CLiPS).

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Substrate phage: selection of protease substrates by monovalent phage display

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Rapid identification of highly active and selective substrates for stromelysin and matrilysin using bacteriophage peptide display libraries

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Peptide libraries: determination of relative reaction rates of protected amino acids in competitive couplings

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

A combinatorial approach for determining protease specificities: application to interleukin-1beta converting enzyme (ICE)

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Substrate activity screening (SAS): a general procedure for the preparation and screening of a fragment-based non-peptidic protease substrate library for inhibitor discovery

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Proteomic techniques and activity-based probes for the system-wide study of proteolysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Methods for mapping protease specificity

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Activity-based probes as a tool for functional proteomic analysis of proteases.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Zwischenmolekulare Energiewanderung und Fluoreszenz

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Using specificity to strategically target proteases

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Quantification of peptides for the monitoring of protease-catalyzed reactions by matrix-assisted laser desorption/ionization mass spectrometry using ionic liquid matrixes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Quantitative matrix-assisted laser desorption/ionization mass spectrometry for the determination of enzyme activities

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Monitoring enzymatic conversions by mass spectrometry: a critical review

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Expanding the range of 'druggable' targets with natural product-based libraries: an academic perspective

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

A proteomic approach for the discovery of protease substrates

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Identification of proteolytic cleavage sites by quantitative proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

A quantitative proteomics design for systematic identification of protease cleavage events.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Development of inductively coupled plasma-mass spectrometry-based protease assays.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Multiplexed protease assays using element-tagged substrates

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

QIKS--Quantitative identification of kinase substrates

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Protease degradomics: mass spectrometry discovery of protease substrates and the CLIP-CHIP, a dedicated DNA microarray of all human proteases and inhibitors

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Multiplex N-terminome analysis of MMP-2 and MMP-9 substrate degradomes by iTRAQ-TAILS quantitative proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Detection of protease activities with the mass-spectrometry-assisted enzyme-screening (MES) system

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Complementary positional proteomics for screening substrates of endo- and exoproteases

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Isotopic labeling of terminal amines in complex samples identifies protein N-termini and protease cleavage products

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Global mapping of the topography and magnitude of proteolytic events in apoptosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Proteome-wide analysis of protein carboxy termini: C terminomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Terminal proteomics: N- and C-terminal analyses for high-fidelity identification of proteins using MS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Global profiling of protease cleavage sites by chemoselective labeling of protein N-termini

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

High resolution analysis of snake venom metalloproteinase (SVMP) peptide bond cleavage specificity using proteome based peptide libraries and mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Broad coverage identification of multiple proteolytic cleavage site sequences in complex high molecular weight proteins using quantitative proteomics as a complement to edman sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Global sequencing of proteolytic cleavage sites in apoptosis by specific labeling of protein N termini

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Inflammatory stimuli regulate caspase substrate profiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

A statistics-based platform for quantitative N-terminome analysis and identification of protease cleavage products

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Proteomic analyses reveal an acidic prime side specificity for the astacin metalloprotease family reflected by physiological substrates

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Matrix metalloproteinase processing of CXCL11/I-TAC results in loss of chemoattractant activity and altered glycosaminoglycan binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Chromatographic isolation of methionine-containing peptides for gel-free proteome analysis: identification of more than 800 Escherichia coli proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

The Degradome database: mammalian proteases and diseases of proteolysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

PMAP: databases for analyzing proteolytic events and pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

The Pfam protein families database

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

21 January 2018

The Protein Data Bank

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Comparative protein structure modeling using Modeller

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

TopFIND, a knowledgebase linking protein termini with function.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

The CASBAH: a searchable database of caspase substrates

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Peptide and protein quantification: a map of the minefield.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

A uniform proteomics MS/MS analysis platform utilizing open XML file formats

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

TOPP--the OpenMS proteomics pipeline

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Sequence logos: a new way to display consensus sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Two Sample Logo: a graphical representation of the differences between two sets of sequence alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

WebLogo: A Sequence Logo Generator

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Characterization of the prime and non-prime active site specificities of proteases by proteome-derived peptide libraries and tandem mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Structural determinants of limited proteolysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

GPS-CCD: a novel computational program for the prediction of calpain cleavage sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

GraBCas: a bioinformatics tool for score-based prediction of Caspase- and Granzyme B-cleavage sites in protein sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

CASVM: web server for SVM-based prediction of caspase substrates cleavage sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Cascleave: towards more accurate prediction of caspase substrate cleavage sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Prediction of protease substrates using sequence and structure features

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Access to cellulose limits the efficiency of enzymatic hydrolysis: the role of amorphogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Phospholipase A2 as a probe of phospholipid distribution in erythrocyte membranes. Factors influencing the apparent specificity of the reaction

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Suborganellar localization of proteinase catalyzing the limited hydrolysis of pumpkin globulin.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Internally quenched fluorescent peptide substrates disclose the subsite preferences of human caspases 1, 3, 6, 7 and 8

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Mass spectrometry-based proteomics turns quantitative

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Proteomic study of human glioblastoma multiforme tissue employing complementary two-dimensional liquid chromatography- and mass spectrometry-based approaches

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Multidimensional degradomics identifies systemic autoantigens and intracellular matrix proteins as novel gelatinase B/MMP-9 substrates

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

Improved visualization of protein consensus sequences by iceLogo

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100379

21 January 2018

Identifiers

DOI

10.1002/PMIC.201100379

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22246699%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

1 reference