Does CTCF mediate between nuclear organization and gene expression? (Q37658609)

1 July 2019

review article

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title

Does CTCF mediate between nuclear organization and gene expression? (English)

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1 July 2019

author

Victor V Lobanenkov

series ordinal

2

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1 July 2019

author name string

Rolf Ohlsson

series ordinal

1

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1 July 2019

Elena Klenova

series ordinal

3

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1 July 2019

language of work or name

English

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publication date

1 January 2010

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1 July 2019

published in

BioEssays

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1 July 2019

volume

32

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1 July 2019

page(s)

37-50

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1 July 2019

issue

1

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1 July 2019

Critical role for the transcription regulator CCCTC-binding factor in the control of Th2 cytokine expression.

cites work

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https://api.crossref.org/works/10.1002%2FBIES.200900118

An exceptionally conserved transcriptional repressor, CTCF, employs different combinations of zinc fingers to bind diverged promoter sequences of avian and mammalian c-myc oncogenes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.200900118

Cutting edge: developmental stage-specific recruitment of cohesin to CTCF sites throughout immunoglobulin loci during B lymphocyte development

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.200900118

CTCF, a conserved nuclear factor required for optimal transcriptional activity of the chicken c-myc gene, is an 11-Zn-finger protein differentially expressed in multiple forms

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.200900118

The protein CTCF is required for the enhancer blocking activity of vertebrate insulators

21 January 2018

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12 December 2020

Transcriptional repression by the insulator protein CTCF involves histone deacetylases

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12 December 2020

Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene

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12 December 2020

CTCF mediates methylation-sensitive enhancer-blocking activity at the H19/Igf2 locus

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12 December 2020

Functional association of CTCF with the insulator upstream of the H19 gene is parent of origin-specific and methylation-sensitive

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12 December 2020

Physical and functional interaction between two pluripotent proteins, the Y-box DNA/RNA-binding factor, YB-1, and the multivalent zinc finger factor, CTCF

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12 December 2020

A transcriptional insulator at the imprinted H19/Igf2 locus

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12 December 2020

Geometric analysis and comparison of protein-DNA interfaces: why is there no simple code for recognition?

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12 December 2020

Functional phosphorylation sites in the C-terminal region of the multivalent multifunctional transcriptional factor CTCF

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12 December 2020

Chromosome territories, nuclear architecture and gene regulation in mammalian cells

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12 December 2020

CTCF is a uniquely versatile transcription regulator linked to epigenetics and disease

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12 December 2020

Making contacts on a nucleic acid polymer

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12 December 2020

CTCF, a candidate trans-acting factor for X-inactivation choice

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12 December 2020

Tumor-associated zinc finger mutations in the CTCF transcription factor selectively alter tts DNA-binding specificity

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12 December 2020

Capturing chromosome conformation

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12 December 2020

The chicken beta-globin insulator element conveys chromatin boundary activity but not imprinting at the mouse Igf2/H19 domain.

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12 December 2020

Molecular cloning and expression of the chromatin insulator protein CTCF in Xenopus laevis.

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12 December 2020

Multiple nucleosome positioning sites regulate the CTCF-mediated insulator function of the H19 imprinting control region

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12 December 2020

BORIS, a novel male germ-line-specific protein associated with epigenetic reprogramming events, shares the same 11-zinc-finger domain with CTCF, the insulator protein involved in reading imprinting marks in the soma

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12 December 2020

Position-effect protection and enhancer blocking by the chicken beta-globin insulator are separable activities

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12 December 2020

The novel BORIS + CTCF gene family is uniquely involved in the epigenetics of normal biology and cancer

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12 December 2020

CTCF maintains differential methylation at the Igf2/H19 locus

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12 December 2020

Looping and interaction between hypersensitive sites in the active beta-globin locus

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12 December 2020

Nucleosome positioning signals in the DNA sequence of the human and mouse H19 imprinting control regions.

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12 December 2020

The nucleotides responsible for the direct physical contact between the chromatin insulator protein CTCF and the H19 imprinting control region manifest parent of origin-specific long-distance insulation and methylation-free domains

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12 December 2020

Thyroid hormone-regulated enhancer blocking: cooperation of CTCF and thyroid hormone receptor

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12 December 2020

CTCF tethers an insulator to subnuclear sites, suggesting shared insulator mechanisms across species

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12 December 2020

Mutation of a single CTCF target site within the H19 imprinting control region leads to loss of Igf2 imprinting and complex patterns of de novo methylation upon maternal inheritance.

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12 December 2020

YB-1 and CTCF differentially regulate the 5-HTT polymorphic intron 2 enhancer which predisposes to a variety of neurological disorders

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12 December 2020

The binding sites for the chromatin insulator protein CTCF map to DNA methylation-free domains genome-wide

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12 December 2020

Poly(ADP-ribosyl)ation regulates CTCF-dependent chromatin insulation.

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12 December 2020

Chromatin organization in the mammalian nucleus

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12 December 2020

CTCF is conserved from Drosophila to humans and confers enhancer blocking of the Fab-8 insulator

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12 December 2020

Familial cases of point mutations in the XIST promoter reveal a correlation between CTCF binding and pre-emptive choices of X chromosome inactivation

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12 December 2020

Interchromosomal associations between alternatively expressed loci

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12 December 2020

Reciprocal binding of CTCF and BORIS to the NY-ESO-1 promoter coincides with derepression of this cancer-testis gene in lung cancer cells

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12 December 2020

The human enhancer blocker CTC-binding factor interacts with the transcription factor Kaiso

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12 December 2020

Antisense transcription and heterochromatin at the DM1 CTG repeats are constrained by CTCF.

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12 December 2020

CTCF binds the proximal exonic region of hTERT and inhibits its transcription

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12 December 2020

CTCF mediates interchromosomal colocalization between Igf2/H19 and Wsb1/Nf1.

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12 December 2020

Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations

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12 December 2020

Flanking HS-62.5 and 3' HS1, and regions upstream of the LCR, are not required for beta-globin transcription

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12 December 2020

Cloning and characterization of zebrafish CTCF: Developmental expression patterns, regulation of the promoter region, and evolutionary aspects of gene organization

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12 December 2020

CTCF binding at the H19 imprinting control region mediates maternally inherited higher-order chromatin conformation to restrict enhancer access to Igf2

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12 December 2020

Epigenetic control of CTCFL/BORIS and OCT4 expression in urogenital malignancies.

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12 December 2020

CTCF-dependent chromatin insulator is linked to epigenetic remodeling

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12 December 2020

CTCF mediates long-range chromatin looping and local histone modification in the beta-globin locus

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12 December 2020

Regulatory factor interactions and somatic silencing of the germ cell-specific ALF gene

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12 December 2020

Epigenetic boundaries of tumour suppressor gene promoters: the CTCF connection and its role in carcinogenesis

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12 December 2020

Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C).

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12 December 2020

Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions.

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12 December 2020

The testis-specific factor CTCFL cooperates with the protein methyltransferase PRMT7 in H19 imprinting control region methylation

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12 December 2020

SATB1 packages densely looped, transcriptionally active chromatin for coordinated expression of cytokine genes.

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12 December 2020

CTCF interacts with and recruits the largest subunit of RNA polymerase II to CTCF target sites genome-wide

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12 December 2020

Identification of a Ctcf cofactor, Yy1, for the X chromosome binary switch.

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12 December 2020

Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions

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12 December 2020

How are cohesin rings opened and closed?

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12 December 2020

Beyond the sequence: cellular organization of genome function

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12 December 2020

Analysis of the H19ICR insulator

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12 December 2020

Global expression analysis of cancer/testis genes in uterine cancers reveals a high incidence of BORIS expression

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12 December 2020

Epigenetic regulation of the human retinoblastoma tumor suppressor gene promoter by CTCF

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12 December 2020

Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome

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12 December 2020

High-resolution profiling of histone methylations in the human genome

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12 December 2020

Nuclear organization of the genome and the potential for gene regulation

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12 December 2020

CTCF genomic binding sites in Drosophila and the organisation of the bithorax complex

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12 December 2020

Inter-chromosomal gene regulation in the mammalian cell nucleus

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12 December 2020

Three-dimensional genome organization in interphase and its relation to genome function

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12 December 2020

We gather together: insulators and genome organization

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12 December 2020

Genetics and epigenetics of the multifunctional protein CTCF.

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12 December 2020

Evidence that homologous X-chromosome pairing requires transcription and Ctcf protein.

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12 December 2020

Expression of the CTCF-paralogous cancer-testis gene, brother of the regulator of imprinted sites (BORIS), is regulated by three alternative promoters modulated by CpG methylation and by CTCF and p53 transcription factors

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12 December 2020

CTCFBSDB: a CTCF-binding site database for characterization of vertebrate genomic insulators

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12 December 2020

Gene regulation through nuclear organization.

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12 December 2020

Genetics. Widespread monoallelic expression

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12 December 2020

CTCF is the master organizer of domain-wide allele-specific chromatin at the H19/Igf2 imprinted region

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12 December 2020

BORIS, a paralogue of the transcription factor, CTCF, is aberrantly expressed in breast tumours

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12 December 2020

Cohesins localize with CTCF at the KSHV latency control region and at cellular c-myc and H19/Igf2 insulators

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12 December 2020

Cohesin mediates transcriptional insulation by CCCTC-binding factor

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12 December 2020

Cohesins functionally associate with CTCF on mammalian chromosome arms

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12 December 2020

High-resolution circular chromosome conformation capture assay.

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12 December 2020

The insulator factor CTCF controls MHC class II gene expression and is required for the formation of long-distance chromatin interactions

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12 December 2020

A complex deoxyribonucleic acid looping configuration associated with the silencing of the maternal Igf2 allele

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12 December 2020

Chromatin dynamics and gene positioning

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12 December 2020

Gene regulation in the third dimension

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12 December 2020

Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions

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12 December 2020

Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

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12 December 2020

Three-dimensional conformation at the H19/Igf2 locus supports a model of enhancer tracking

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12 December 2020

Transvection mediated by the translocated cyclin D1 locus in mantle cell lymphoma

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12 December 2020

The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome

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12 December 2020

CTCF regulates allelic expression of Igf2 by orchestrating a promoter-polycomb repressive complex 2 intrachromosomal loop

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12 December 2020

Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data

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12 December 2020

The evolution of epigenetic regulators CTCF and BORIS/CTCFL in amniotes

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12 December 2020

Chromatin insulators: regulatory mechanisms and epigenetic inheritance

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12 December 2020

The LPS-induced transcriptional upregulation of the chicken lysozyme locus involves CTCF eviction and noncoding RNA transcription.

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12 December 2020

The meaning of gene positioning

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12 December 2020

CTCF regulates cell cycle progression of alphabeta T cells in the thymus

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12 December 2020

De novo formation of a subnuclear body

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12 December 2020

CTCF cis-regulates trinucleotide repeat instability in an epigenetic manner: a novel basis for mutational hot spot determination

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12 December 2020

The CTCF insulator protein is posttranslationally modified by SUMO.

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12 December 2020

Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains

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12 December 2020

Purification of proteins associated with specific genomic Loci

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12 December 2020

Human gamma-satellite DNA maintains open chromatin structure and protects a transgene from epigenetic silencing

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12 December 2020

CCCTC-binding factor meets poly(ADP-ribose) polymerase-1.

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12 December 2020

Active promoters and insulators are marked by the centrosomal protein 190.

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12 December 2020

Replication timing and epigenetic reprogramming of gene expression: a two-way relationship?

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12 December 2020

Cell cycle control of Kaposi's sarcoma-associated herpesvirus latency transcription by CTCF-cohesin interactions

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12 December 2020

Three subclasses of a Drosophila insulator show distinct and cell type-specific genomic distributions

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12 December 2020

Hierarchical hidden Markov model with application to joint analysis of ChIP-chip and ChIP-seq data

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12 December 2020

Epigenetic silencing of the p16(INK4a) tumor suppressor is associated with loss of CTCF binding and a chromatin boundary

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12 December 2020

Chromatin structure is implicated in "late" elongation checkpoints on the U2 snRNA and beta-actin genes

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12 December 2020

Cohesins form chromosomal cis-interactions at the developmentally regulated IFNG locus

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12 December 2020

The pluripotency factor Oct4 interacts with Ctcf and also controls X-chromosome pairing and counting

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12 December 2020

CTCF: master weaver of the genome

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12 December 2020

Identification of a perinuclear positioning element in human subtelomeres that requires A-type lamins and CTCF.

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12 December 2020

Impact of chromatin structures on DNA processing for genomic analyses

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12 December 2020

Decreased poly(ADP-ribosyl)ation of CTCF, a transcription factor, is associated with breast cancer phenotype and cell proliferation

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12 December 2020

Chromosome crosstalk in three dimensions.

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12 December 2020

Modular structure of a chicken lysozyme silencer: involvement of an unusual thyroid hormone receptor binding site

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12 December 2020

A novel sequence-specific DNA binding protein which interacts with three regularly spaced direct repeats of the CCCTC-motif in the 5'-flanking sequence of the chicken c-myc gene

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12 December 2020

A 5' element of the chicken beta-globin domain serves as an insulator in human erythroid cells and protects against position effect in Drosophila

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12 December 2020

The zinc finger protein CTCF binds to the APBbeta domain of the amyloid beta-protein precursor promoter. Evidence for a role in transcriptional activation

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12 December 2020

Identifiers

DOI

10.1002/BIES.200900118

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1 July 2019

PMCID

6375297

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1 July 2019

PubMed ID

20020479

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1 July 2019