Intrinsic amino acid side-chain hydrophilicity/hydrophobicity coefficients determined by reversed-phase high-performance liquid chromatography of model peptides: comparison with other hydrophilicity/hydrophobicity scales (Q37473836)

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scientific article published on January 2009

Language	Label	Description	Also known as
English	Intrinsic amino acid side-chain hydrophilicity/hydrophobicity coefficients determined by reversed-phase high-performance liquid chromatography of model peptides: comparison with other hydrophilicity/hydrophobicity scales	scientific article published on January 2009

Statements

scholarly article

1 reference

Europe PubMed Central

20 August 2017

1 reference

Europe PubMed Central

Intrinsic amino acid side-chain hydrophilicity/hydrophobicity coefficients determined by reversed-phase high-performance liquid chromatography of model peptides: comparison with other hydrophilicity/hydrophobicity scales (English)

1 reference

Europe PubMed Central

20 August 2017

1 reference

based on heuristic

inferred from title

0 references

high-performance liquid chromatography

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based on heuristic

inferred from title

David D. Pollock

4

1 reference

Europe PubMed Central

20 August 2017

author name string

Colin T Mant

1

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Europe PubMed Central

20 August 2017

James M Kovacs

2

1 reference

Europe PubMed Central

20 August 2017

Hyun-Min Kim

3

1 reference

Europe PubMed Central

20 August 2017

Robert S Hodges

5

1 reference

Europe PubMed Central

20 August 2017

publication date

1 January 2009

1 reference

Europe PubMed Central

20 August 2017

1 reference

Europe PubMed Central

20 August 2017

92

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Europe PubMed Central

20 August 2017

6

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Europe PubMed Central

20 August 2017

573-595

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Europe PubMed Central

20 August 2017

describes a project that uses

reversed-phase high-performance liquid chromatography

1 reference

based on heuristic

inferred from title

Predictions of peptides' retention times in reversed-phase liquid chromatography as a new supportive tool to improve protein identification in proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792893

23 August 2017

Requirements for prediction of peptide retention time in reversed-phase high-performance liquid chromatography: hydrophilicity/hydrophobicity of side-chains at the N- and C-termini of peptides are dramatically affected by the end-groups and location

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792893

23 August 2017

Determination of intrinsic hydrophilicity/hydrophobicity of amino acid side chains in peptides in the absence of nearest-neighbor or conformational effects

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792893

23 August 2017

Rational design of alpha-helical antimicrobial peptides with enhanced activities and specificity/therapeutic index

1 reference

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23 August 2017

Evaluation of methods for measuring amino acid hydrophobicities and interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792893

23 August 2017

Determination of stereochemistry stability coefficients of amino acid side-chains in an amphipathic alpha-helix.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792893

23 August 2017

A single-stranded amphipathic alpha-helix in aqueous solution: design, structural characterization, and its application for determining alpha-helical propensities of amino acids

1 reference

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23 August 2017

Charged histidine affects alpha-helix stability at all positions in the helix by interacting with the backbone charges

1 reference

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23 August 2017

Induced conformational states of amphipathic peptides in aqueous/lipid environments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792893

23 August 2017

Prediction of peptide retention times in high-pressure liquid chromatography on the basis of amino acid composition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792893

23 August 2017

Solvation energy in protein folding and binding

1 reference

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23 August 2017

Quantitation of the nearest-neighbour effects of amino acid side-chains that restrict conformational freedom of the polypeptide chain using reversed-phase liquid chromatography of synthetic model peptides with L- and D-amino acid substitutions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792893

26 June 2018

The perchlorate anion is more effective than the trifluoroacetate anion as an ion-pairing reagent for reversed-phase chromatography of peptides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792893

26 June 2018

Quantitative comparison of the ability of hydropathy scales to recognize surface beta-strands in proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792893

26 June 2018

Guidelines for membrane protein engineering derived from de novo designed model peptides.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792893

26 June 2018

Comparison of the binding of alpha-helical and beta-sheet peptides to a hydrophobic surface.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792893

26 June 2018

Residue helix parameters obtained from dichroic analysis of peptides of defined sequence.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792893

26 June 2018

Effect of a single aspartate on helix stability at different positions in a neutral alanine-based peptide

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792893

26 June 2018

Helix propensities of the amino acids measured in alanine-based peptides without helix-stabilizing side-chain interactions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792893

26 June 2018

Surface tension of amino acid solutions: A hydrophobicity scale of the amino acid residues

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792893

26 June 2018

Effect of preferred binding domains on peptide retention behavior in reversed-phase chromatography: amphipathic alpha-helices.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792893

26 June 2018

Effects of side-chain characteristics on stability and oligomerization state of a de novo-designed model coiled-coil: 20 amino acid substitutions in position "d".

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792893

2 September 2018

The energetics of ion-pair and hydrogen-bonding interactions in a helical peptide

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792893

2 September 2018

Relative helix-forming tendencies of nonpolar amino acids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792893

2 September 2018

A thermodynamic scale for the helix-forming tendencies of the commonly occurring amino acids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792893

2 September 2018

Induction of amphipathic helical peptide structures in RP-HPLC

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792893

2 October 2018

Extension of the fragment method to calculate amino acid zwitterion and side chain partition coefficients

1 reference

https://pubmed.ncbi.nlm.nih.gov/19795449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Reversed-phase chromatographic method development for peptide separations using the computer simulation program ProDigest-LC

1 reference

https://pubmed.ncbi.nlm.nih.gov/19795449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Positional independence and additivity of amino acid replacements on helix stability in monomeric peptides

1 reference

https://pubmed.ncbi.nlm.nih.gov/19795449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A novel method to measure self-association of small amphipathic molecules: temperature profiling in reversed-phase chromatography

1 reference

https://pubmed.ncbi.nlm.nih.gov/19795449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Temperature profiling of polypeptides in reversed-phase liquid chromatography. I. Monitoring of dimerization and unfolding of amphipathic alpha-helical peptides

1 reference

https://pubmed.ncbi.nlm.nih.gov/19795449

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based on heuristic

inferred from PubMed ID database lookup

Temperature profiling of polypeptides in reversed-phase liquid chromatography. II. Monitoring of folding and stability of two-stranded alpha-helical coiled-coils

1 reference

https://pubmed.ncbi.nlm.nih.gov/19795449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The isolation of peptides by high-performance liquid chromatography using predicted elution positions

1 reference

https://pubmed.ncbi.nlm.nih.gov/19795449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Effects of ion-pairing reagents on the prediction of peptide retention in reversed-phase high-performance liquid chromatography

1 reference

https://pubmed.ncbi.nlm.nih.gov/19795449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Effect of central-residue replacements on the helical stability of a monomeric peptide

1 reference

https://pubmed.ncbi.nlm.nih.gov/19795449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Side chain contributions to the stability of alpha-helical structure in peptides

1 reference

https://pubmed.ncbi.nlm.nih.gov/19795449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Effect of the alpha-amino group on peptide retention behaviour in reversed-phase chromatography. Determination of the pK(a) values of the alpha-amino group of 19 different N-terminal amino acid residues

1 reference

https://pubmed.ncbi.nlm.nih.gov/19795449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Reversed-phase chromatography of synthetic amphipathic α-helical peptides as a model for ligand/receptor interactions Effect of changing hydrophobic environment on the relative hydrophilicity/hydrophobicity of amino acid side-chains

1 reference

https://pubmed.ncbi.nlm.nih.gov/19795449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Relationship of sidechain hydrophobicity and alpha-helical propensity on the stability of the single-stranded amphipathic alpha-helix

1 reference

https://pubmed.ncbi.nlm.nih.gov/19795449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Effect of peptide chain length on peptide retention behaviour in reversed-phase chromatography

1 reference

https://pubmed.ncbi.nlm.nih.gov/19795449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1002/BIP.21316

1 reference

Europe PubMed Central

20 August 2017

1 reference

Europe PubMed Central

20 August 2017

1 reference

Europe PubMed Central

20 August 2017

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