Structural systems biology evaluation of metabolic thermotolerance in Escherichia coli (Q37184562)

18 August 2017

Structural systems biology evaluation of metabolic thermotolerance in Escherichia coli (English)

1 reference

18 August 2017

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1 reference

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5

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18 August 2017

6

Bernhard O Palsson

1 reference

18 August 2017

Roger L Chang

1

1 reference

18 August 2017

Kathleen Andrews

series ordinal

2

1 reference

18 August 2017

Donghyuk Kim

series ordinal

3

1 reference

18 August 2017

Zhanwen Li

series ordinal

4

1 reference

18 August 2017

language of work or name

English

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publication date

1 June 2013

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18 August 2017

4

1 reference

based on heuristic

inferred from page(s)

published in

Science

1 reference

18 August 2017

340

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18 August 2017

6137

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18 August 2017

1220-1223

1 reference

A structural systems biology approach for quantifying the systemic consequences of missense mutations in proteins.

18 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777776

Structure-based prediction of protein–protein interactions on a genome-wide scale

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777776

Three-dimensional reconstruction of protein networks provides insight into human genetic disease

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777776

Reorganizing the protein space at the Universal Protein Resource (UniProt)

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777776

Physical limits of cells and proteomes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777776

EcoCyc: a comprehensive database of Escherichia coli biology

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777776

BRENDA, the enzyme information system in 2011

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777776

ASD: a comprehensive database of allosteric proteins and modulators

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777776

RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777776

Drug off-target effects predicted using structural analysis in the context of a metabolic network model

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777776

Essential genes from Arctic bacteria used to construct stable, temperature-sensitive bacterial vaccines

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777776

Three-dimensional structural view of the central metabolic network of Thermotoga maritima

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777776

Selection and optimization of microbial hosts for biofuels production

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777776

Genome-wide transcriptional responses of Escherichia coli K-12 to continuous osmotic and heat stresses

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777776

Structures in systems biology

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777776

Potential and utilization of thermophiles and thermostable enzymes in biorefining

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777776

ProTherm and ProNIT: thermodynamic databases for proteins and protein-nucleic acid interactions

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777776

The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777776

6 September 2017

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777776

Regulation of coenzyme A biosynthesis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777776

Experimental evolution of a facultative thermophile from a mesophilic ancestor

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777776

A comprehensive genome-scale reconstruction of Escherichia coli metabolism--2011.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777776

Hydration and heat stability effects on protein unfolding

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777776

Computational thermostabilization of an enzyme

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777776

Modeling growth rates as a function of temperature: model performance evaluation with focus on the suboptimal temperature range

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777776

The molecular diversity of adaptive convergence.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777776

Dynamics of Escherichia coli at elevated temperatures: effect of temperature history and medium.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3777776

Evolutionary changes in heat-inducible gene expression in lines of Escherichia coli adapted to high temperature

3 September 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1234012

Molecular strategy for survival at a critical high temperature in Eschierichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1234012

KEGG: kyoto encyclopedia of genes and genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1234012

PubChem: Integrated Platform of Small Molecules and Biological Activities

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1234012

FFAS server: novel features and applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1234012

A graph-theory algorithm for rapid protein side-chain prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1234012

Comparative protein modelling by satisfaction of spatial restraints

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1234012

The molecular basis of the effect of temperature on enzyme activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1234012

Thermal denaturations of staphylococcal nuclease wild-type and mutants monitored by fluorescence and circular dichroism are similar: lack of evidence for other than a two state thermal denaturation

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1234012

Comparison of the chemical and thermal denaturation of proteins by a two-state transition model.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1234012

UCSF Chimera--a visualization system for exploratory research and analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1234012

The effects of alternate optimal solutions in constraint-based genome-scale metabolic models

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1234012

What is flux balance analysis?

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1234012

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1234012

Genome-scale in silico models of E. coli have multiple equivalent phenotypic states: assessment of correlated reaction subsets that comprise network states.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1234012

Genome-scale metabolic model of Helicobacter pylori 26695.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1234012

ANAIS: analysis of NimbleGen arrays interface

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1234012

A dynamic approach to predicting bacterial growth in food.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1234012

Predicting melting temperature directly from protein sequences

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23744946

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Evolution of thermal dependence of growth rate of Escherichia coli populations during 20,000 generations in a constant environment

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23744946

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

SMILES, a chemical language and information system. 1. Introduction to methodology and encoding rules

1 reference

COCI

https://opencitations.net/index/coci/api/v1/citations/10.1021/CI00057A005

11 September 2021

Identifiers

DOI

10.1126/SCIENCE.1234012

1 reference

18 August 2017

0 references

1 reference

18 August 2017

1 reference