The impact of RNA structure on picornavirus IRES activity. (Q37141606)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18420413%20AND%20SRC:MED&resulttype=core&format=json

5 January 2020

review article

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title

The impact of RNA structure on picornavirus IRES activity (English)

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18420413%20AND%20SRC:MED&resulttype=core&format=json

Encarnación Martínez-Salas

5 January 2020

author

series ordinal

1

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5 January 2020

author name string

Encarnación Martínez-Salas

series ordinal

1

1 reference

18 August 2017

15 April 2008

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18420413%20AND%20SRC:MED&resulttype=core&format=json

5 January 2020

published in

Trends in Microbiology

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5 January 2020

volume

16

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5 January 2020

issue

5

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5 January 2020

page(s)

230-237

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Structure of the 5' nontranslated region of the coxsackievirus b3 genome: Chemical modification and comparative sequence analysis

5 January 2020

cites work

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Picornavirus IRES: structure function relationship

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In vivo footprint of a picornavirus internal ribosome entry site reveals differences in accessibility to specific RNA structural elements

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Cap-independent translation is required for starvation-induced differentiation in yeast

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Activity of a type 1 picornavirus internal ribosomal entry site is determined by sequences within the 3' nontranslated region

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Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor.

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Translational control by viral proteinases

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IRES-driven translation is stimulated separately by the FMDV 3'-NCR and poly(A) sequences

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Poliovirus internal ribosome entry segment structure alterations that specifically affect function in neuronal cells: molecular genetic analysis

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Cell-specific proteins regulate viral RNA translation and virus-induced disease

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Foot-and-mouth disease virus infection induces proteolytic cleavage of PTB, eIF3a,b, and PABP RNA-binding proteins

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Differential utilization of poly(rC) binding protein 2 in translation directed by picornavirus IRES elements

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Conserved structural motifs located in distal loops of aphthovirus internal ribosome entry site domain 3 are required for internal initiation of translation.

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Common and distinctive features of GNRA tetraloops based on a GUAA tetraloop structure at 1.4 A resolution

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HCV and CSFV IRES domain II mediate eIF2 release during 80S ribosome assembly

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Parameters influencing translational efficiency in aphthovirus IRES-based bicistronic expression vectors

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Eukaryotic initiation factors 4G and 4A mediate conformational changes downstream of the initiation codon of the encephalomyocarditis virus internal ribosomal entry site

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Internal initiation of translation in eukaryotes: the picornavirus paradigm and beyond

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Translational control of retroviruses.

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Translation eukaryotic initiation factor 4G recognizes a specific structural element within the internal ribosome entry site of encephalomyocarditis virus RNA.

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Functional and structural similarities between the internal ribosome entry sites of hepatitis C virus and porcine teschovirus, a picornavirus

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Stimulation of picornavirus replication by the poly(A) tail in a cell-free extract is largely independent of the poly(A) binding protein (PABP).

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Crystal structure of an RNA tertiary domain essential to HCV IRES-mediated translation initiation

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12 December 2020

Structural and functional characterization of the coxsackievirus B3 CRE(2C): role of CRE(2C) in negative- and positive-strand RNA synthesis

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12 December 2020

IRES interaction with translation initiation factors: functional characterization of novel RNA contacts with eIF3, eIF4B, and eIF4GII.

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12 December 2020

tRNA–mRNA mimicry drives translation initiation from a viral IRES

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12 December 2020

NMR structures of loop B RNAs from the stem-loop IV domain of the enterovirus internal ribosome entry site: a single C to U substitution drastically changes the shape and flexibility of RNA.

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12 December 2020

Comparative genomics of foot-and-mouth disease virus

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Switch from translation to RNA replication in a positive-stranded RNA virus

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Dual initiation sites of protein synthesis on foot-and-mouth disease virus RNA are selected following internal entry and scanning of ribosomes in vivo

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Interaction of a cellular 57-kilodalton protein with the internal translation initiation site of foot-and-mouth disease virus

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12 December 2020

Evidence of reciprocal tertiary interactions between conserved motifs involved in organizing RNA structure essential for internal initiation of translation

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Specific inhibition of aphthovirus infection by RNAs transcribed from both the 5' and the 3' noncoding regions.

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A segment of the 5' nontranslated region of encephalomyocarditis virus RNA directs internal entry of ribosomes during in vitro translation

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Specific cleavage of hepatitis C virus RNA genome by human RNase P.

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Structural insights into the transcriptional and translational roles of Ebp1

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Downstream ribosomal entry for translation of coronavirus TGEV gene 3b

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A cell cycle-dependent protein serves as a template-specific translation initiation factor

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12 December 2020

Internal ribosome entry sites in eukaryotic mRNA molecules

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12 December 2020

Interaction of the eIF4G initiation factor with the aphthovirus IRES is essential for internal translation initiation in vivo

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12 December 2020

The RNA2 5' leader of Blackcurrant reversion virus mediates efficient in vivo translation through an internal ribosomal entry site mechanism

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12 December 2020

Picornavirus RNA translation: roles for cellular proteins.

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12 December 2020

A 5' RNA element promotes dengue virus RNA synthesis on a circular genome

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12 December 2020

Cap-dependent and cap-independent translation in eukaryotic systems

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12 December 2020

A Distinct Group of Hepacivirus/Pestivirus-Like Internal Ribosomal Entry Sites in Members of Diverse Picornavirus Genera: Evidence for Modular Exchange of Functional Noncoding RNA Elements by Recombination

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12 December 2020

Functional interactions in internal translation initiation directed by viral and cellular IRES elements.

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12 December 2020

NMR studies of the structure and Mg2+ binding properties of a conserved RNA motif of EMCV picornavirus IRES element

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12 December 2020

Identification of an essential region for internal initiation of translation in the aphthovirus internal ribosome entry site and implications for viral evolution

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12 December 2020

Involvement of the aphthovirus RNA region located between the two functional AUGs in start codon selection

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12 December 2020

Genetic adaptation to untranslated region-mediated enterovirus growth deficits by mutations in the nonstructural proteins 3AB and 3CD.

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12 December 2020

A selection system for functional internal ribosome entry site (IRES) elements: analysis of the requirement for a conserved GNRA tetraloop in the encephalomyocarditis virus IRES.

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12 December 2020

Deletion or substitution of the aphthovirus 3' NCR abrogates infectivity and virus replication

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12 December 2020

Novel reactions of RNAase P with a tRNA-like structure in turnip yellow mosaic virus RNA.

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12 December 2020

Initiation of protein synthesis from the A site of the ribosome

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12 December 2020

Structural and mechanistic insights into hepatitis C viral translation initiation

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12 December 2020

A prokaryotic-like mode of cytoplasmic eukaryotic ribosome binding to the initiation codon during internal translation initiation of hepatitis C and classical swine fever virus RNAs

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12 December 2020

Detection of tRNA-like Structure through RNase P Cleavage of Viral Internal Ribosome Entry Site RNAs Near the AUG Start Triplet

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12 December 2020

Structure of the ribosome-bound cricket paralysis virus IRES RNA.

1 reference

12 December 2020

Unr is required in vivo for efficient initiation of translation from the internal ribosome entry sites of both rhinovirus and poliovirus.

1 reference

12 December 2020

Conserved nucleotides within the J domain of the encephalomyocarditis virus internal ribosome entry site are required for activity and for interaction with eIF4G.

1 reference

12 December 2020

Competitive translation efficiency at the picornavirus type 1 internal ribosome entry site facilitated by viral cis and trans factors

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12 December 2020

Internal initiation of translation of eukaryotic mRNA directed by a sequence derived from poliovirus RNA

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12 December 2020

Characterizing the function and structural organization of the 5' tRNA-like motif within the hepatitis C virus quasispecies

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12 December 2020

A nucleo-cytoplasmic SR protein functions in viral IRES-mediated translation initiation

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12 December 2020

The scanning model for translation: an update

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12 December 2020

Structural basis for ribosome recruitment and manipulation by a viral IRES RNA.

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12 December 2020

Structural organization of a viral IRES depends on the integrity of the GNRA motif.

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12 December 2020

The 3' end of the foot-and-mouth disease virus genome establishes two distinct long-range RNA-RNA interactions with the 5' end region

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12 December 2020

Structure of the hepatitis C virus IRES bound to the human 80S ribosome: remodeling of the HCV IRES.

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12 December 2020

RNase P: interface of the RNA and protein worlds

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12 December 2020

Characterization of a cyanobacterial RNase P ribozyme recognition motif in the IRES of foot-and-mouth disease virus reveals a unique structural element

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12 December 2020

Polycistronic viral vectors

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12 December 2020

The stem loop II within the 5' nontranslated region of clinical coxsackievirus B3 genomes determines cardiovirulence phenotype in a murine model

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12 December 2020

Long-range RNA interactions between structural domains of the aphthovirus internal ribosome entry site (IRES).

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12 December 2020

Differential factor requirement to assemble translation initiation complexes at the alternative start codons of foot-and-mouth disease virus RNA.

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12 December 2020

10.1016/J.TIM.2008.01.013

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18420413%20AND%20SRC:MED&resulttype=core&format=json

5 January 2020

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