Characterizing the function and structural organization of the 5' tRNA-like motif within the hepatitis C virus quasispecies (Q24795645)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15755750%20AND%20SRC:MED&resulttype=core&format=json

9 January 2020

title

Characterizing the function and structural organization of the 5' tRNA-like motif within the hepatitis C virus quasispecies (English)

1 reference

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9 January 2020

0 references

1 reference

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3

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Encarnación Martínez-Salas

9 January 2020

4

1 reference

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9 January 2020

author name string

Maria Piron

1

1 reference

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9 January 2020

Nerea Beguiristain

2

1 reference

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9 January 2020

Jordi Gómez

5

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9 January 2020

language of work or name

English

0 references

publication date

8 March 2005

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9 January 2020

published in

Nucleic Acids Research

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9 January 2020

volume

33

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9 January 2020

issue

5

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9 January 2020

page(s)

1487-1502

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Domains on the hepatitis C virus internal ribosome entry site for 40s subunit binding

9 January 2020

cites work

1 reference

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A tRNA-like structure is present in 10Sa RNA, a small stable RNA from Escherichia coli

7 April 2017

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Replication and IRES-Dependent Translation Are Both Affected by Core Coding Sequences in Subgenomic GB Virus B Replicons

7 April 2017

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Long-range RNA-RNA interaction between the 5' nontranslated region and the core-coding sequences of hepatitis C virus modulates the IRES-dependent translation

7 April 2017

1 reference

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The influence of viral coding sequences on pestivirus IRES activity reveals further parallels with translation initiation in prokaryotes.

7 April 2017

1 reference

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The Ribosome Binding Site of Hepatitis C Virus mRNA

7 April 2017

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The influence of downstream protein-coding sequence on internal ribosome entry on hepatitis C virus and other flavivirus RNAs

7 April 2017

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Mechanism of ribosome recruitment by hepatitis C IRES RNA

7 April 2017

1 reference

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Core protein-coding sequence, but not core protein, modulates the efficiency of cap-independent translation directed by the internal ribosome entry site of hepatitis C virus

7 April 2017

1 reference

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An enzymatic footprinting analysis of the interaction of 40S ribosomal subunits with the internal ribosomal entry site of hepatitis C virus

7 April 2017

1 reference

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Nucleotide and amino acid complexity of hepatitis C virus quasispecies in serum and liver

7 April 2017

1 reference

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A phylogenetically conserved stem-loop structure at the 5' border of the internal ribosome entry site of hepatitis C virus is required for cap-independent viral translation.

7 April 2017

1 reference

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Coding sequences enhance internal initiation of translation by hepatitis A virus RNA in vitro

7 April 2017

1 reference

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Stability of a stem-loop involving the initiator AUG controls the efficiency of internal initiation of translation on hepatitis C virus RNA.

7 April 2017

1 reference

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Internal initiation of translation of hepatitis C virus RNA: the ribosome entry site is at the authentic initiation codon

7 April 2017

1 reference

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Hepatitis C virus (HCV) circulates as a population of different but closely related genomes: quasispecies nature of HCV genome distribution

7 April 2017

1 reference

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Internal ribosome entry site within hepatitis C virus RNA

7 April 2017

1 reference

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Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

7 April 2017

1 reference

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A prokaryotic-like mode of cytoplasmic eukaryotic ribosome binding to the initiation codon during internal translation initiation of hepatitis C and classical swine fever virus RNAs

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1062876

Eukaryotic transient-expression system based on recombinant vaccinia virus that synthesizes bacteriophage T7 RNA polymerase

7 April 2017

1 reference

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The brome mosaic virus RNA3 intergenic replication enhancer folds to mimic a tRNA TpsiC-stem loop and is modified in vivo

7 April 2017

1 reference

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RNA virus mutations and fitness for survival

7 April 2017

1 reference

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Unique features of internal initiation of hepatitis C virus RNA translation

7 April 2017

1 reference

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Structural requirements for initiation of translation by internal ribosome entry within genome-length hepatitis C virus RNA

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1062876

Detection of tRNA-like Structure through RNase P Cleavage of Viral Internal Ribosome Entry Site RNAs Near the AUG Start Triplet

7 April 2017

1 reference

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Identification of an essential pseudoknot in the putative downstream internal ribosome entry site in giardiavirus transcript

28 September 2017

1 reference

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RNase P: variations and uses

28 September 2017

1 reference

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IRES interaction with translation initiation factors: functional characterization of novel RNA contacts with eIF3, eIF4B, and eIF4GII.

28 September 2017

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Hepatitis C virus internal ribosome entry site RNA contains a tertiary structural element in a functional domain of stem-loop II.

28 September 2017

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Internal initiation of translation efficiency in different hepatitis C genotypes isolated from interferon treated patients

28 September 2017

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Conserved structural motifs located in distal loops of aphthovirus internal ribosome entry site domain 3 are required for internal initiation of translation.

28 September 2017

1 reference

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Comparison of picornaviral IRES-driven internal initiation of translation in cultured cells of different origins.

28 September 2017

1 reference

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Identification of an essential region for internal initiation of translation in the aphthovirus internal ribosome entry site and implications for viral evolution

28 September 2017

1 reference

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A single nucleotide substitution in the internal ribosome entry site of foot-and-mouth disease virus leads to enhanced cap-independent translation in vivo

28 September 2017

1 reference

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Length requirements for tRNA-specific enzymes and cleavage specificity at the 3′ end of turnip yellow mosaic virus RNA

28 September 2017

1 reference

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Targeted cleavage of mRNA by human RNase P

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1062876

Almost the entire 5' non-translated region of hepatitis C virus is required for cap-independent translation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1062876

Molecular cloning and heterogeneity of the human hepatitis C virus (HCV) genome

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1062876

Novel reactions of RNAase P with a tRNA-like structure in turnip yellow mosaic virus RNA.

30 May 2018

1 reference

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Kinetics of the processing of the precursor to 4.5 S RNA, a naturally occurring substrate for RNase P from Escherichia coli.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1062876

Catalytic RNase P RNA from Synechocystis sp. cleaves the hepatitis C virus RNA near the AUG start codon

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1062876

Specific cleavage of hepatitis C virus RNA genome by human RNase P.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1062876

The hepatitis C virus internal ribosome entry site adopts an ion-dependent tertiary fold

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1062876

Complete 5' noncoding region is necessary for the efficient internal initiation of hepatitis C virus RNA.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1062876

Selection of guide sequences that direct efficient cleavage of mRNA by human ribonuclease P.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1062876

Genotypes with phenotypes: adventures in an RNA toy world

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15755750

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKI290

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15755750%20AND%20SRC:MED&resulttype=core&format=json

9 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15755750%20AND%20SRC:MED&resulttype=core&format=json

9 January 2020

1 reference