The mitochondrial genome map of Nelumbo nucifera reveals ancient evolutionary features (Q37117402)

18 August 2017

The mitochondrial genome map of Nelumbo nucifera reveals ancient evolutionary features (English)

1 reference

18 August 2017

Nelumbo nucifera

1 reference

7

Yi Ding

1 reference

18 August 2017

Songtao Gui

1

1 reference

18 August 2017

Zhihua Wu

2

1 reference

18 August 2017

Hongyuan Zhang

3

1 reference

18 August 2017

Yinzhen Zheng

4

1 reference

18 August 2017

Zhixuan Zhu

5

1 reference

18 August 2017

Dequan Liang

6

1 reference

18 August 2017

language of work or name

English

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publication date

22 July 2016

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18 August 2017

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18 August 2017

6

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18 August 2017

30158

1 reference

describes a project that uses

18 August 2017

MIRA

object named as

MIRA

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1038/srep30158

0 references

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A precise chloroplast genome of Nelumbo nucifera (Nelumbonaceae) evaluated with Sanger, Illumina MiSeq, and PacBio RS II sequencing platforms: insight into the plastid evolution of basal eudicots

14 September 2017

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14 September 2017

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An evaluation of the PacBio RS platform for sequencing and de novo assembly of a chloroplast genome

14 September 2017

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14 September 2017

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14 September 2017

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The complete sequence of the mitochondrial genome of Butomus umbellatus--a member of an early branching lineage of monocotyledons

14 September 2017

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The "fossilized" mitochondrial genome of Liriodendron tulipifera: ancestral gene content and order, ancestral editing sites, and extraordinarily low mutation rate

14 September 2017

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A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers

14 September 2017

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14 September 2017

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De novo assembly of the carrot mitochondrial genome using next generation sequencing of whole genomic DNA provides first evidence of DNA transfer into an angiosperm plastid genome.

14 September 2017

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The mitochondrial genome of the lycophyte Huperzia squarrosa: the most archaic form in vascular plants

14 September 2017

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Rapid evolution of enormous, multichromosomal genomes in flowering plant mitochondria with exceptionally high mutation rates

14 September 2017

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MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

14 September 2017

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Testing for selection on synonymous sites in plant mitochondrial DNA: the role of codon bias and RNA editing

14 September 2017

1 reference

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Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots

14 September 2017

1 reference

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Insights into the evolution of mitochondrial genome size from complete sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae).

14 September 2017

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Circos: an information aesthetic for comparative genomics

14 September 2017

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Fast and accurate short read alignment with Burrows-Wheeler transform

14 September 2017

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Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957087

jModelTest: phylogenetic model averaging

14 September 2017

1 reference

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The mitochondrial genome of the gymnosperm Cycas taitungensis contains a novel family of short interspersed elements, Bpu sequences, and abundant RNA editing sites

14 September 2017

1 reference

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Angiosperm mitochondrial genomes and mutations.

14 September 2017

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Clustal W and Clustal X version 2.0

14 September 2017

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Comparative chloroplast genomics: analyses including new sequences from the angiosperms Nuphar advena and Ranunculus macranthus

14 September 2017

1 reference

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PAML 4: phylogenetic analysis by maximum likelihood

14 September 2017

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The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs

14 September 2017

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BLAST: at the core of a powerful and diverse set of sequence analysis tools

14 September 2017

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14 September 2017

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The complete nucleotide sequence and RNA editing content of the mitochondrial genome of rapeseed (Brassica napus L.): comparative analysis of the mitochondrial genomes of rapeseed and Arabidopsis thaliana

14 September 2017

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A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

14 September 2017

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The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants

14 September 2017

1 reference

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Punctuated evolution of mitochondrial gene content: high and variable rates of mitochondrial gene loss and transfer to the nucleus during angiosperm evolution

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957087

BLAT—The BLAST-Like Alignment Tool

14 September 2017

1 reference

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Evolution of organellar genomes

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957087

Pollen and anther development in Nelumbo (Nelumbonaceae)

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957087

On the possibility of constructive neutral evolution

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957087

The atypical codon usage of the plant psbA gene may be the remnant of an ancestral bias

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957087

First Complete Genome Sequence of Pseudomonas aeruginosa (Schroeter 1872) Migula 1900 (DSM 50071T), Determined Using PacBio Single-Molecule Real-Time Technology

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957087

The complete mitochondrial DNA sequence of Mesostigma viride identifies this green alga as the earliest green plant divergence and predicts a highly compact mitochondrial genome in the ancestor of all green plants

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957087

The rps3-rpl16-nad3-rps12 gene cluster in rice mitochondrial DNA is transcribed from alternative promoters.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957087

Unprecedented heterogeneity in the synonymous substitution rate within a plant genome

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957087

The sacred lotus genome provides insights into the evolution of flowering plants.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957087

A horizontally transferred tRNA(Cys) gene in the sugar beet mitochondrial genome: evidence that the gene is present in diverse angiosperms and its transcript is aminoacylated.

3 September 2018

1 reference

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Aggressive assembly of pyrosequencing reads with mates

3 September 2018

1 reference

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A Rapid and effective method for RNA extraction from different tissues of grapevine and other woody plants

3 September 2018

1 reference

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GenomeVx: simple web-based creation of editable circular chromosome maps.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957087

Modeling sites of RNA editing as a fifth nucleotide state reveals progressive loss of edited sites from angiosperm mitochondria

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957087

The complete nucleotide sequence and multipartite organization of the tobacco mitochondrial genome: comparative analysis of mitochondrial genomes in higher plants.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957087

Bioinformatic discovery and initial characterisation of nine novel antimicrobial peptide genes in the chicken.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957087

The mitochondrial genome of Chara vulgaris: insights into the mitochondrial DNA architecture of the last common ancestor of green algae and land plants.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957087

Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.).

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957087

Accelerated evolution of sites undergoing mRNA editing in plant mitochondria and chloroplasts.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4957087

Late Cretaceous and Cenozoic Vegetation in China, Emphasizing Their Connections With North America

3 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FSREP30158

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FSREP30158

Structural analysis of mitochondrial DNA molecules from fungi and plants using moving pictures and pulsed-field gel electrophoresis

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27444405

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Mitochondrial DNA of Vitis vinifera and the issue of rampant horizontal gene transfer

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27444405

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/SREP30158

1 reference

release_jpumoqiodnhcjcct7fbachheaq

18 August 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/jpumoqiodnhcjcct7fbachheaq

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

18 August 2017

1 reference