Elongation dynamics shape bursty transcription and translation (Q37115166)

18 August 2017

Elongation dynamics shape bursty transcription and translation (English)

1 reference

18 August 2017

Maciej Dobrzynski

1

1 reference

PMCID

2650307

18 August 2017

Frank J Bruggeman

series ordinal

2

1 reference

PMCID

2650307

18 August 2017

language of work or name

English

0 references

publication date

5 February 2009

1 reference

18 August 2017

6

1 reference

Proceedings of the National Academy of Sciences of the United States of America

inferred from page(s)

published in

1 reference

18 August 2017

106

1 reference

18 August 2017

8

1 reference

18 August 2017

2583-2588

1 reference

The generation of promoter-mediated transcriptional noise in bacteria

18 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650307

Poised polymerases: on your mark...get set...go!

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650307

Following translation by single ribosomes one codon at a time.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650307

Halting a cellular production line: responses to ribosomal pausing during translation

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650307

Stochastic gene expression: from single molecules to the proteome

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650307

Stochastic mRNA synthesis in mammalian cells

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650307

Noise in protein expression scales with natural protein abundance

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650307

Transcriptional pulsing of a developmental gene

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650307

Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650307

Real-time kinetics of gene activity in individual bacteria

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650307

Stochasticity in gene expression: from theories to phenotypes

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650307

Gene regulation at the single-cell level

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650307

Thinking quantitatively about transcriptional regulation.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650307

Self-consistent proteomic field theory of stochastic gene switches

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650307

Summing up the noise in gene networks

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650307

Fast evaluation of fluctuations in biochemical networks with the linear noise approximation

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650307

Frequency domain analysis of noise in autoregulated gene circuits.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650307

Stochastic gene expression in a single cell

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650307

Regulation of noise in the expression of a single gene

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650307

Pausing by bacterial RNA polymerase is mediated by mechanistically distinct classes of signals

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650307

Nonequilibrium mechanism of transcription termination from observations of single RNA polymerase molecules

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650307

Demand theory of gene regulation. I. Quantitative development of the theory.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650307

On the stochastic properties of bursts of single ion channel openings and of clusters of bursts

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650307

Variability and memory of protein levels in human cells

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650307

Variable pause positions of RNA polymerase II lie proximal to the c-myc promoter irrespective of transcriptional activity.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650307

Prevalence of RNA polymerase stalling at Escherichia coli promoters after open complex formation

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650307

Stochastic switching as a survival strategy in fluctuating environments

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650307

Effects of molecular memory and bursting on fluctuations in gene expression.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650307

Fluctuations, pauses, and backtracking in DNA transcription

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650307

Backtracking determines the force sensitivity of RNAP II in a factor-dependent manner

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650307

Diffusion of transcription factors can drastically enhance the noise in gene expression

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650307

Probing gene expression in live cells, one protein molecule at a time.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650307

Free RNA polymerase and modeling global transcription in Escherichia coli.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650307

A Ratchet Mechanism of Transcription Elongation and Its Control

3 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.0803507106

Stochastic protein expression in individual cells at the single molecule level

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.0803507106

Cleavage of the A site mRNA codon during ribosome pausing provides a mechanism for translational quality control

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19196995

12 December 2020

inferred from PubMed ID database lookup

Ribosome stalling during translation elongation induces cleavage of mRNA being translated in Escherichia coli

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19196995

12 December 2020

inferred from PubMed ID database lookup

Linking stochastic dynamics to population distribution: an analytical framework of gene expression

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19196995

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1073/PNAS.0803507106

1 reference

18 August 2017

0 references

1 reference

18 August 2017

1 reference

PMCID

2650307