An affinity-based scoring scheme for predicting DNA-binding activities of modularly assembled zinc-finger proteins. (Q37077406)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19056825%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

title

An affinity-based scoring scheme for predicting DNA-binding activities of modularly assembled zinc-finger proteins (English)

1 reference

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18 January 2020

4

1 reference

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18 January 2020

Drena Dobbs

series ordinal

5

1 reference

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18 January 2020

3

J Keith Joung

1 reference

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18 January 2020

author name string

Jeffry D Sander

series ordinal

1

1 reference

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18 January 2020

Peter Zaback

series ordinal

2

1 reference

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18 January 2020

language of work or name

English

0 references

publication date

4 December 2008

1 reference

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18 January 2020

published in

Nucleic Acids Research

1 reference

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18 January 2020

volume

37

1 reference

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18 January 2020

page(s)

506-515

1 reference

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18 January 2020

issue

2

1 reference

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Rapid "open-source" engineering of customized zinc-finger nucleases for highly efficient gene modification

18 January 2020

cites work

1 reference

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Zinc-finger nucleases: the next generation emerges

29 September 2017

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Unexpected failure rates for modular assembly of engineered zinc fingers

29 September 2017

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DNA-binding specificity is a major determinant of the activity and toxicity of zinc-finger nucleases

29 September 2017

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Custom-designed zinc finger nucleases: what is next?

29 September 2017

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29 September 2017

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Standardized reagents and protocols for engineering zinc finger nucleases by modular assembly.

29 September 2017

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A systems approach to measuring the binding energy landscapes of transcription factors

29 September 2017

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Correlation between functional and binding activities of designer zinc-finger proteins

29 September 2017

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29 September 2017

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29 September 2017

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Efficient gene targeting in Drosophila with zinc-finger nucleases

29 September 2017

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Zinc finger nucleases: custom-designed molecular scissors for genome engineering of plant and mammalian cells

29 September 2017

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Development of zinc finger domains for recognition of the 5'-CNN-3' family DNA sequences and their use in the construction of artificial transcription factors

29 September 2017

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Gene targeting using zinc finger nucleases

29 September 2017

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Quantitative analysis of EGR proteins binding to DNA: assessing additivity in both the binding site and the protein

29 September 2017

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Towards therapeutic applications of engineered zinc finger proteins

29 September 2017

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Highly specific zinc finger proteins obtained by directed domain shuffling and cell-based selection

29 September 2017

1 reference

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Human zinc fingers as building blocks in the construction of artificial transcription factors.

29 September 2017

1 reference

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Evaluation of a modular strategy for the construction of novel polydactyl zinc finger DNA-binding proteins

29 September 2017

1 reference

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Additivity in protein-DNA interactions: how good an approximation is it?

29 September 2017

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The use of zinc finger peptides to study the role of specific factor binding sites in the chromatin environment.

29 September 2017

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Rearrangement of side-chains in a Zif268 mutant highlights the complexities of zinc finger-DNA recognition

29 September 2017

1 reference

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Design and selection of novel Cys2His2 zinc finger proteins

29 September 2017

1 reference

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Development of zinc finger domains for recognition of the 5'-ANN-3' family of DNA sequences and their use in the construction of artificial transcription factors

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2632909

DNA recognition by Cys2His2 zinc finger proteins

29 September 2017

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Positive and negative regulation of endogenous genes by designed transcription factors

29 September 2017

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Toward controlling gene expression at will: selection and design of zinc finger domains recognizing each of the 5'-GNN-3' DNA target sequences

29 September 2017

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Toward controlling gene expression at will: specific regulation of the erbB-2/HER-2 promoter by using polydactyl zinc finger proteins constructed from modular building blocks

29 September 2017

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Specificity, free energy and information content in protein-DNA interactions

29 September 2017

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Zif268 protein-DNA complex refined at 1.6 A: a model system for understanding zinc finger-DNA interactions

29 September 2017

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A zinc finger directory for high-affinity DNA recognition

29 September 2017

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Fluorescence polarization analysis of protein-DNA and protein-protein interactions

29 September 2017

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Use of a zinc-finger consensus sequence framework and specificity rules to design specific DNA binding proteins

29 September 2017

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Surface plasmon resonance based kinetic studies of zinc finger-DNA interactions

29 September 2017

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Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 A

29 September 2017

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Context-dependent DNA recognition code for C2H2 zinc-finger transcription factors

29 September 2017

1 reference

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Algorithm for prediction of tumour suppressor p53 affinity for binding sites in DNA.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2632909

Applications of fluorescence anisotropy to the study of protein-DNA interactions

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2632909

Structure of Aart, a designed six-finger zinc finger peptide, bound to DNA.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2632909

Custom zinc-finger nucleases for use in human cells.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2632909

RNA target specificity of the STAR/GSG domain post-transcriptional regulatory protein GLD-1.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2632909

Probabilistic code for DNA recognition by proteins of the EGR family.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2632909

Validated zinc finger protein designs for all 16 GNN DNA triplet targets

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2632909

Analysis of zinc fingers optimized via phage display: evaluating the utility of a recognition code

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2632909

Peptides derived from HIV-1 Rev inhibit HIV-1 integrase in a shiftide mechanism

20 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19056825

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKN962

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19056825%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19056825%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

1 reference