Large-scale sequence and structural comparisons of human naive and antigen-experienced antibody repertoires (Q36905073)

17 August 2017

Large-scale sequence and structural comparisons of human naive and antigen-experienced antibody repertoires (English)

1 reference

17 August 2017

1 reference

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27114511%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Daisuke Kuroda

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27114511%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Gregory C Ippolito

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27114511%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

1

Brandon J DeKosky

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27114511%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

author name string

Oana I Lungu

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27114511%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Erik L Johnson

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27114511%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Wissam Charab

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27114511%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Constantine Chrysostomou

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27114511%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Jeffrey J Gray

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27114511%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Andrew D Ellington

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27114511%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

George Georgiou

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27114511%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

language of work or name

English

0 references

publication date

25 April 2016

1 reference

Proceedings of the National Academy of Sciences of the United States of America

17 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27114511%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

volume

113

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27114511%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

issue

19

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27114511%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

page(s)

E2636-45

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27114511%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

4 June 2020

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/4868480

inferred from PubMed Central ID database lookup

cites work

Ultra-high-throughput sequencing of the immune receptor repertoire from millions of lymphocytes

1 reference

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Analysis of B Cell Repertoire Dynamics Following Hepatitis B Vaccination in Humans, and Enrichment of Vaccine-specific Antibody Sequences

29 September 2017

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In-Depth Assessment of Within-Individual and Inter-Individual Variation in the B Cell Receptor Repertoire

29 September 2017

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λ Light Chain Bias Associated With Enhanced Binding and Function of Anti-HIV Env Glycoprotein Antibodies

29 September 2017

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Restricted, canonical, stereotyped and convergent immunoglobulin responses

29 September 2017

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Sequencing the functional antibody repertoire--diagnostic and therapeutic discovery

29 September 2017

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Human responses to influenza vaccination show seroconversion signatures and convergent antibody rearrangements

29 September 2017

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Automated Aufbau of antibody structures from given sequences using Macromoltek's SmrtMolAntibody.

29 September 2017

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High-resolution modeling of antibody structures by a combination of bioinformatics, expert knowledge, and molecular simulations

29 September 2017

1 reference

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Differences in the composition of the human antibody repertoire by B cell subsets in the blood

29 September 2017

1 reference

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Redistribution of flexibility in stabilizing antibody fragment mutants follows Le Châtelier's principle

29 September 2017

1 reference

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Antibody modeling assessment II. Structures and models

29 September 2017

1 reference

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Antibody structure determination using a combination of homology modeling, energy-based refinement, and loop prediction.

29 September 2017

1 reference

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Blind prediction performance of RosettaAntibody 3.0: grafting, relaxation, kinematic loop modeling, and full CDR optimization.

29 September 2017

1 reference

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Identification and characterization of the constituent human serum antibodies elicited by vaccination.

29 September 2017

1 reference

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The promise and challenge of high-throughput sequencing of the antibody repertoire.

29 September 2017

1 reference

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The shape of the lymphocyte receptor repertoire: lessons from the B cell receptor

29 September 2017

1 reference

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Convergent antibody signatures in human dengue

29 September 2017

1 reference

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IgBLAST: an immunoglobulin variable domain sequence analysis tool

29 September 2017

1 reference

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High-throughput sequencing of the paired human immunoglobulin heavy and light chain repertoire.

29 September 2017

1 reference

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Global analysis of B cell selection using an immunoglobulin light chain-mediated model of autoreactivity

29 September 2017

1 reference

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Preconfiguration of the antigen-binding site during affinity maturation of a broadly neutralizing influenza virus antibody

29 September 2017

1 reference

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Advances in human B cell phenotypic profiling

29 September 2017

1 reference

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Fully human monoclonal antibodies from antibody secreting cells after vaccination with Pneumovax®23 are serotype specific and facilitate opsonophagocytosis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4868480

Antibody repertoires in humanized NOD-scid-IL2Rγ(null) mice and human B cells reveals human-like diversification and tolerance checkpoints in the mouse

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4868480

IgM memory B cells: a mouse/human paradox.

29 September 2017

1 reference

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Naive antibody gene-segment frequencies are heritable and unaltered by chronic lymphocyte ablation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4868480

High-resolution description of antibody heavy-chain repertoires in humans

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4868480

Differential expression analysis for sequence count data

29 September 2017

1 reference

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Search and clustering orders of magnitude faster than BLAST

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4868480

High-throughput immunoglobulin repertoire analysis distinguishes between human IgM memory and switched memory B-cell populations

29 September 2017

1 reference

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IMGT/V-QUEST: the highly customized and integrated system for IG and TR standardized V-J and V-D-J sequence analysis

29 September 2017

1 reference

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B-cell self-tolerance in humans

29 September 2017

1 reference

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Igkappa allelic inclusion is a consequence of receptor editing

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4868480

Evidence for preferential Ig gene usage and differential TdT and exonuclease activities in human naïve and memory B cells

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4868480

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4868480

Stability improvement of antibodies for extracellular and intracellular applications: CDR grafting to stable frameworks and structure-based framework engineering

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4868480

Predominant autoantibody production by early human B cell precursors

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4868480

Immunoglobulin heavy chain expression shapes the B cell receptor repertoire in human B cell development

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4868480

Contributions of a highly conserved VH/VL hydrogen bonding interaction to scFv folding stability and refolding efficiency

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4868480

Antibody structure and the evolution of immunoglobulin V gene segments.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4868480

Analysis of mutations in immunoglobulin heavy chain variable region genes of microdissected marginal zone (MGZ) B cells suggests that the MGZ of human spleen is a reservoir of memory B cells

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4868480

Three-dimensional structure of membrane and surface proteins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4868480

Evolution of antibody structure during the immune response. The differentiative potential of a single B lymphocyte

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4868480

The mutation patterns in B-cell immunoglobulin receptors reflect the influence of selection acting at multiple time-scales

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4868480

In-depth determination and analysis of the human paired heavy- and light-chain antibody repertoire

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4868480

Intrinsic bias and public rearrangements in the human immunoglobulin Vλ light chain repertoire.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4868480

The relationship between CD27 negative and positive B cell populations in human peripheral blood

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4868480

Divergent human populations show extensive shared IGK rearrangements in peripheral blood B cells

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4868480

Human blood IgM "memory" B cells are circulating splenic marginal zone B cells harboring a prediversified immunoglobulin repertoire

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4868480

kappa+lambda+ dual receptor B cells are present in the human peripheral repertoire

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4868480

Antibody and antigen contact residues define epitope and paratope size and structure

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4868480

High frequencies of activated B cells and T follicular helper cells are correlated with disease activity in patients with new-onset rheumatoid arthritis.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4868480

Igs expressed by chronic lymphocytic leukemia B cells show limited binding-site structure variability.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4868480

High-throughput antibody sequencing reveals genetic evidence of global regulation of the naïve and memory repertoires that extends across individuals.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4868480

The influence of the framework core residues on the biophysical properties of immunoglobulin heavy chain variable domains

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4868480

Conserved amino acid networks involved in antibody variable domain interactions

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4868480

Analysis of heavy and light chain pairings indicates that receptor editing shapes the human antibody repertoire.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4868480

Rapid comparison of protein structures

4 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1525510113

Germline VH/VL pairing in antibodies

21 January 2018

1 reference

12 December 2020

Receptor editing can lead to allelic inclusion and development of B cells that retain antibodies reacting with high avidity autoantigens

1 reference

12 December 2020

Regulation of immunoglobulin light chain gene rearrangements during early B cell development in the human

1 reference

12 December 2020

Pairing of variable heavy and variable kappa chains in individual naive and memory B cells

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.1525510113

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27114511%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27114511%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

1 reference