Targeted gene knock in and sequence modulation mediated by a psoralen-linked triplex-forming oligonucleotide (Q36727299)

15 August 2017

Targeted gene knock in and sequence modulation mediated by a psoralen-linked triplex-forming oligonucleotide (English)

1 reference

15 August 2017

Alokes Majumdar

1

1 reference

15 August 2017

Parameswary A Muniandy

2

1 reference

15 August 2017

Jia Liu

3

1 reference

15 August 2017

Ji-lan Liu

4

1 reference

15 August 2017

Su-ting Liu

5

1 reference

15 August 2017

Bernard Cuenoud

6

1 reference

15 August 2017

Michael M Seidman

7

1 reference

15 August 2017

language of work or name

English

0 references

publication date

25 February 2008

1 reference

Journal of Biological Chemistry

15 August 2017

1 reference

15 August 2017

283

1 reference

15 August 2017

17

1 reference

15 August 2017

11244-11252

1 reference

Human CtIP promotes DNA end resection

15 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

The ERCC1/XPF endonuclease is required for efficient single-strand annealing and gene conversion in mammalian cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Repair and recombination induced by triple helix DNA.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Non-homologous end-joining for repairing I-SceI-induced DNA double strand breaks in human cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Gel purification of genomic DNA removes contaminating small DNA fragments interfering with polymerase chain reaction analysis of small fragment homologous replacement

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Generation of a mouse mutant by oligonucleotide-mediated gene modification in ES cells.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Conservative repair of a chromosomal double-strand break by single-strand DNA through two steps of annealing.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Targeted chromosomal gene modification in human cells by single-stranded oligodeoxynucleotides in the presence of a DNA double-strand break

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

UV radiation induces delayed hyperrecombination associated with hypermutation in human cells.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Differential usage of non-homologous end-joining and homologous recombination in double strand break repair

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Assaying double-strand break repair pathway choice in mammalian cells using a targeted endonuclease or the RAG recombinase

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

REV3 and REV1 play major roles in recombination-independent repair of DNA interstrand cross-links mediated by monoubiquitinated proliferating cell nuclear antigen (PCNA).

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

DNA interstrand crosslink repair during G1 involves nucleotide excision repair and DNA polymerase zeta

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Triplex targeted genomic crosslinks enter separable deletion and base substitution pathways

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Mammalian gene targeting with designed zinc finger nucleases

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Repair of double-strand DNA breaks by the human nonhomologous DNA end joining pathway: the iterative processing model

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Independent and sequential recruitment of NHEJ and HR factors to DNA damage sites in mammalian cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Chromosomal aberrations induced by double strand DNA breaks

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Genetic steps of mammalian homologous repair with distinct mutagenic consequences

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Collaboration of homologous recombination and nonhomologous end-joining factors for the survival and integrity of mice and cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Importance of clustered 2'-O-(2-aminoethyl) residues for the gene targeting activity of triple helix-forming oligonucleotides

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Physical and functional interaction between the XPF/ERCC1 endonuclease and hRad52

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Chromosomal site-specific double-strand breaks are efficiently targeted for repair by oligonucleotides in yeast

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Branched oligonucleotides induce in vivo gene conversion of a mutated EGFP reporter

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

The potential for gene repair via triple helix formation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Cell cycle modulation of gene targeting by a triple helix-forming oligonucleotide.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Design, activity, and structure of a highly specific artificial endonuclease

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Ku DNA end-binding protein modulates homologous repair of double-strand breaks in mammalian cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

The structure-specific endonuclease Ercc1-Xpf is required for targeted gene replacement in embryonic stem cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Mutation in Brca2 stimulates error-prone homology-directed repair of DNA double-strand breaks occurring between repeated sequences

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Capture of DNA sequences at double-strand breaks in mammalian chromosomes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Manipulating the mammalian genome by homologous recombination

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Chromosomal stability and the DNA double-stranded break connection

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Coupled homologous and nonhomologous repair of a double-strand break preserves genomic integrity in mammalian cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Role of ERCC1 in removal of long non-homologous tails during targeted homologous recombination

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Role of the nucleotide excision repair gene ERCC1 in formation of recombination-dependent rearrangements in mammalian cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Repair of an interstrand DNA cross-link initiated by ERCC1-XPF repair/recombination nuclease.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Mouse RAD54 affects DNA double-strand break repair and sister chromatid exchange

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Multiple pathways for repair of DNA double-strand breaks in mammalian chromosomes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Chromosomal double-strand breaks introduced in mammalian cells by expression of I-Sce I endonuclease

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Homology-directed repair is a major double-strand break repair pathway in mammalian cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Gene conversion tracts from double-strand break repair in mammalian cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Recombination-dependent deletion formation in mammalian cells deficient in the nucleotide excision repair gene ERCC1

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Survival, mutagenesis, and host cell reactivation in a Chinese hamster ovary cell ERCC1 knock-out mutant

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Cell cycle dependence of radiation-induced homologous recombination in cultured monkey cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Recombination induced by triple-helix-targeted DNA damage in mammalian cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Reversible G1 arrest in the cell cycle of human lymphoid cell lines by dimethyl sulfoxide

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Frequency of intrachromosomal homologous recombination induced by UV radiation in normally repairing and excision repair-deficient human cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

LMPCR for detection of oligonucleotide-directed triple helix formation: a cautionary note

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Introduction of double-strand breaks into the genome of mouse cells by expression of a rare-cutting endonuclease

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Both cross-links and monoadducts induced in DNA by psoralens can lead to sister chromatid exchange formation

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431054

Interstrand crosslink-induced homologous recombination carries an increased risk of deletions and insertions.

28 June 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M800607200

Induction of DNA replication-mediated double strand breaks by psoralen DNA interstrand cross-links

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M800607200

Minimum number of 2'-O-(2-aminoethyl) residues required for gene knockout activity by triple helix forming oligonucleotides

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M800607200

Processing of a psoralen DNA interstrand cross-link by XPF-ERCC1 complex in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M800607200

DNA repair defects channel interstrand DNA cross-links into alternate recombinational and error-prone repair pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M800607200

Genomic sequence correction by single-stranded DNA oligonucleotides: role of DNA synthesis and chemical modifications of the oligonucleotide ends

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M800607200

Misleading gene conversion frequencies due to a PCR artifact using small fragment homologous replacement

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M800607200

Rad51 overexpression promotes alternative double-strand break repair pathways and genome instability

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M800607200

FORMATION OF A THREE-STRANDED POLYNUCLEOTIDE MOLECULE

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M800607200

Dual Recognition of Double-Stranded DNA by 2'-Aminoethoxy-Modified Oligonucleotides

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18303025

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Targeted gene knockout mediated by triple helix forming oligonucleotides

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18303025

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Targeted recombination at the Chinese hamster APRT locus using insertion versus replacement vectors

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18303025

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1074/JBC.M800607200

1 reference

15 August 2017

1 reference

15 August 2017

PubMed publication ID

18303025

1 reference