Emergence and global spread of epidemic healthcare-associated Clostridium difficile (Q36708973)

15 August 2017

Emergence and global spread of epidemic healthcare-associated Clostridium difficile (English)

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15 August 2017

Clostridium difficile

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7

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Emma Butt

23

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Derek J Brown

Derek Brown

13

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Simon R Harris

Simon R Harris

8

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Fabio Miyajima

Fabio Miyajima

2

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Ed J Kuijper

Ed Kuijper

30

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Julian Parkhill

Julian Parkhill

34

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Munir Pirmohamed

Munir Pirmohamed

29

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Sharon Peacock

24

Sharon J Peacock

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15 August 2017

16

Dale Gerding

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32

Brendan W Wren

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33

Gordon Dougan

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5

Derek J Pickard

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14

John E Coia

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35

Trevor D Lawley

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4

Louise Ellison

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31

Peter Hawkey

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Miao He

1

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15 August 2017

Paul Roberts

3

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Melissa J Martin

6

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Derek Fairley

9

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Kathleen B Bamford

10

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Stephanie D'Arc

11

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Jon Brazier

12

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Gill Douce

15

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15 August 2017

Hee Jung Kim

17

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15 August 2017

Tse Hsien Koh

18

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15 August 2017

Haru Kato

19

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15 August 2017

Mitsutoshi Senoh

20

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15 August 2017

Tom Louie

21

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Stephen Michell

22

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Nick M Brown

25

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Tom Riley

26

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Glen Songer

27

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Mark Wilcox

28

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15 August 2017

language of work or name

English

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publication date

9 December 2012

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15 August 2017

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45

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109-113

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1

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https://scigraph.springernature.com/pub.10.1038/ng.2478

15 August 2017

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cites work

Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak

1 reference

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Genetic organisation, mobility and predicted functions of genes on integrated, mobile genetic elements in sequenced strains of Clostridium difficile.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605770

Emergence of Clostridium difficile ribotype 027 in Korea

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605770

Rapid pneumococcal evolution in response to clinical interventions

30 September 2017

1 reference

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Clostridium difficile: progress and challenges

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605770

Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity

30 September 2017

1 reference

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Clostridium difficile PCR ribotype 027: assessing the risks of further worldwide spread

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605770

Evolutionary dynamics of Clostridium difficile over short and long time scales

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605770

Evolution of MRSA during hospital transmission and intercontinental spread

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605770

Comparative genome and phenotypic analysis of Clostridium difficile 027 strains provides insight into the evolution of a hypervirulent bacterium

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605770

Bayesian phylogeography finds its roots

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605770

The Sequence Alignment/Map format and SAMtools

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605770

Clostridium difficile infection caused by the epidemic BI/NAP1/027 strain

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605770

Fast and accurate short read alignment with Burrows-Wheeler transform

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605770

Clostridium difficile--more difficult than ever

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605770

jModelTest: phylogenetic model averaging

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605770

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605770

BEAST: Bayesian evolutionary analysis by sampling trees

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605770

Asymptomatic carriers are a potential source for transmission of epidemic and nonepidemic Clostridium difficile strains among long-term care facility residents

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605770

Emergence of Clostridium difficile-associated disease in North America and Europe.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605770

The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605770

Molecular analysis of Clostridium difficile PCR ribotype 027 isolates from Eastern and Western Canada

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605770

An epidemic, toxin gene-variant strain of Clostridium difficile

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605770

A predominantly clonal multi-institutional outbreak of Clostridium difficile-associated diarrhea with high morbidity and mortality

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605770

Application of phylogenetic networks in evolutionary studies

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605770

Mortality attributable to nosocomial Clostridium difficile-associated disease during an epidemic caused by a hypervirulent strain in Quebec

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605770

ACT: the Artemis Comparison Tool

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605770

Fluoroquinolone prescribing in the United States: 1995 to 2002.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605770

Bayesian coalescent inference of past population dynamics from molecular sequences

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605770

Phylogenetic discovery bias in Bacillus anthracis using single-nucleotide polymorphisms from whole-genome sequencing

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605770

Versatile and open software for comparing large genomes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605770

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605770

Fulminant Clostridium difficile: an underappreciated and increasing cause of death and complications

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605770

REPuter: the manifold applications of repeat analysis on a genomic scale

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605770

Bayesian selection of continuous-time Markov chain evolutionary models

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605770

Clostridium difficile PCR ribotype 176 in the Czech Republic and Poland.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605770

TcdB or not TcdB: a tale of two Clostridium difficile toxins.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605770

Detection of gyrA and gyrB mutations in Clostridium difficile isolates by real-time PCR.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605770

Distribution and antimicrobial susceptibility patterns of Clostridium difficile PCR ribotypes in English hospitals, 2007-08.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605770

Update of Clostridium difficile infection due to PCR ribotype 027 in Europe, 2008.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605770

A large outbreak of Clostridium difficile-associated disease with an unexpected proportion of deaths and colectomies at a teaching hospital following increased fluoroquinolone use.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605770

Toxin production by an emerging strain of Clostridium difficile associated with outbreaks of severe disease in North America and Europe

5 September 2018

1 reference

12 December 2020

Clostridium difficile infection in Europe: a hospital-based survey

2 references

12 December 2020

Crossref

https://api.crossref.org/works/10.1038%2FNG.2478

7 January 2021

inferred from DOI database lookup

Severe infection with Clostridium difficile PCR ribotype 027 acquired in Melbourne, Australia

1 reference

12 December 2020

Clostridium difficile: the anaerobe that made the grade

1 reference

12 December 2020

Identifiers

DOI

10.1038/NG.2478

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Dimensions Publication ID

15 August 2017

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15 August 2017

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