Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity (Q24569659)

19

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Peter Lichtner

15

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Ruifu Yang

Ruifu Yang

22

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François Balloux

Francois Balloux

18

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Nicholas Thomson

Nicholas R Thomson

12

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Thierry Wirth

Thierry Wirth

20

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Philippe Roumagnac

Philippe Roumagnac

5

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Thibaut Jombart

13

Thibaut Jombart

0 references

Mark Achtman

24

Mark Achtman

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author name string

Giovanna Morelli

1

0 references

Yajun Song

2

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Camila J Mazzoni

3

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Mark Eppinger

4

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David M Wagner

6

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Mirjam Feldkamp

7

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Barica Kusecek

8

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Amy J Vogler

9

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Yanjun Li

10

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Yujun Cui

11

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Raphael Leblois

14

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Lila Rahalison

16

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Jeannine M Petersen

17

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Elisabeth Carniel

Distinct clones of Yersinia pestis caused the black death

23

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language of work or name

English

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publication date

December 2010

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published in

Nature Genetics

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volume

42

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issue

12

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page(s)

1140-3

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cites work

1 reference

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Genotyping and phylogenetic analysis of Yersinia pestis by MLVA: insights into the worldwide expansion of Central Asia plague foci

24 March 2017

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An African origin for the intimate association between humans and Helicobacter pylori

24 March 2017

1 reference

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Complete Genome Sequence of Yersinia pestis Strains Antiqua and Nepal516: Evidence of Gene Reduction in an Emerging Pathogen

24 March 2017

1 reference

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Microevolution and history of the plague bacillus, Yersinia pestis

24 March 2017

1 reference

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Insights into the evolution of Yersinia pestis through whole-genome comparison with Yersinia pseudotuberculosis

24 March 2017

1 reference

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Versatile and open software for comparing large genomes

24 March 2017

1 reference

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Genome sequence of Yersinia pestis KIM

24 March 2017

1 reference

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Genome sequence of Yersinia pestis, the causative agent of plague

7 April 2017

1 reference

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Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima

24 March 2017

1 reference

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BEAST: Bayesian evolutionary analysis by sampling trees

24 March 2017

1 reference

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Complete Genome Sequence of Yersinia pestis Strain 91001, an Isolate Avirulent to Humans

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999892

Genome sequence of the deep-rooted Yersinia pestis strain Angola reveals new insights into the evolution and pangenome of the plague bacterium

24 March 2017

1 reference

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Recent human-to-poultry host jump, adaptation, and pandemic spread of Staphylococcus aureus

27 September 2017

1 reference

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Draft genome sequences of Yersinia pestis isolates from natural foci of endemic plague in China

27 September 2017

1 reference

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Phylogenetic understanding of clonal populations in an era of whole genome sequencing

27 September 2017

1 reference

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Evolution, population structure, and phylogeography of genetically monomorphic bacterial pathogens

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999892

High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999892

Assays for the rapid and specific identification of North American Yersinia pestis and the common laboratory strain CO92.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999892

Plague: past, present, and future

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999892

The complete genome sequence of Yersinia pseudotuberculosis IP31758, the causative agent of Far East scarlet-like fever

27 September 2017

1 reference

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Yersinia pestis evolution on a small timescale: comparison of whole genome sequences from North America

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999892

Multiple antimicrobial resistance in plague: an emerging public health risk

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999892

A North American Yersinia pestis draft genome sequence: SNPs and phylogenetic analysis

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999892

Evolutionary history of Salmonella typhi

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999892

DNA microarray analysis of genome dynamics in Yersinia pestis: insights into bacterial genome microevolution and niche adaptation.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999892

Intraspecific diversity of Yersinia pestis.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999892

Metapopulation dynamics of bubonic plague

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999892

Recent emergence of new variants of Yersinia pestis in Madagascar

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999892

Pestoides F, an atypical Yersinia pestis strain from the former Soviet Union.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999892

Initiation and spread of traveling waves of plague, Yersinia pestis, in the western United States.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999892

Spatiotemporal modelling and mapping of the bubonic plague epidemic in India.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999892

Multidrug resistance in Yersinia pestis mediated by a transferable plasmid

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999892

Phylogeography of Francisella tularensis: global expansion of a highly fit clone

27 September 2017

1 reference

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Plague studies. 1. A summary of the history and survey of the present distribution of the disease.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999892

Varieties of Pasteurella pestis; new hypothesis

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999892

A history of plague in United States of America

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999892

Design of a compartmentalized shotgun assembler for the human genome.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2999892

IMMUNITY IN PLAGUE. ACQUISITIONS SUPPLIED BY 30 YEARS OF WORK ON THE "PASTEURELLA PESTIS EV" (GIRARD AND ROBIC) STRAIN

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21037571

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NG.705

1 reference

Dimensions Publication ID

384929

1015236659

0 references

384929

1 reference

1 reference

1 reference