Synthetic biology--putting engineering into biology (Q36586096)

15 August 2017

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title

Synthetic biology--putting engineering into biology (English)

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15 August 2017

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Matthias Heinemann

1

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15 August 2017

Sven Panke

series ordinal

2

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15 August 2017

language of work or name

English

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publication date

5 September 2006

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15 August 2017

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15 August 2017

22

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15 August 2017

2790-2799

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15 August 2017

22

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SmartCell, a framework to simulate cellular processes that combines stochastic approximation with diffusion and localisation: analysis of simple networks.

15 August 2017

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Spatiotemporal control of gene expression with pulse-generating networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

A synthetic multicellular system for programmed pattern formation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Designing transcription factor architectures for drug discovery.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Toward high-resolution de novo structure prediction for small proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Design of artificial cell-cell communication using gene and metabolic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Chemical synthesis of poliovirus cDNA: generation of infectious virus in the absence of natural template

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Development of zinc finger domains for recognition of the 5'-ANN-3' family of DNA sequences and their use in the construction of artificial transcription factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Development of zinc finger domains for recognition of the 5'-CNN-3' family DNA sequences and their use in the construction of artificial transcription factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Reprogramming control of an allosteric signaling switch through modular recombination

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Computational design of a biologically active enzyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

A synthetic oscillatory network of transcriptional regulators

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Foundations for engineering biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Modelling cellular behaviour

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

A synthetic gene-metabolic oscillator.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Construction of a genetic toggle switch in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Determination of the core of a minimal bacterial gene set

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Essential genes of a minimal bacterium

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

An apyrimidinic site kinks DNA and triggers incision by endonuclease VII of phage T4.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Cell size and nucleoid organization of engineered Escherichia coli cells with a reduced genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Engineered gene circuits.

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Redirecting tyrosine kinase signaling to an apoptotic caspase pathway through chimeric adaptor proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Engineered riboregulators enable post-transcriptional control of gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Combining two genomes in one cell: stable cloning of the Synechocystis PCC6803 genome in the Bacillus subtilis 168 genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

The engineering of gene regulatory networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Stochasticity in gene expression: from theories to phenotypes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Homogeneous expression of the P(BAD) promoter in Escherichia coli by constitutive expression of the low-affinity high-capacity AraE transporter

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Programmable cells: interfacing natural and engineered gene networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Total synthesis of long DNA sequences: synthesis of a contiguous 32-kb polyketide synthase gene cluster.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Engineering a reduced Escherichia coli genome

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Hysteresis in a synthetic mammalian gene network

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

BioLogic gates enable logical transcription control in mammalian cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

An engineered epigenetic transgene switch in mammalian cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

WebCell: a web-based environment for kinetic modeling and dynamic simulation of cellular networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Space as the final frontier in stochastic simulations of biological systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Synthetic biology: engineering Escherichia coli to see light

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Computational design of receptor and sensor proteins with novel functions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Assessment by molecular dynamics simulations of the structural determinants of DNA-binding specificity for transcription factor Sp1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Engineering a mevalonate pathway in Escherichia coli for production of terpenoids

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Advances in synthetic biology: on the path from prototypes to applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Combinatorial polyketide biosynthesis by de novo design and rearrangement of modular polyketide synthase genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Physically realistic homology models built with ROSETTA can be more accurate than their templates

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Sequence specific DNA binding of Ets-1 transcription factor: molecular dynamics study on the Ets domain--DNA complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Multistability in the lactose utilization network of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Rewiring MAP kinase pathways using alternative scaffold assembly mechanisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Evolutionary programming as a platform for in silico metabolic engineering

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Noise propagation in gene networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

OptStrain: a computational framework for redesign of microbial production systems.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Emergent properties of reduced-genome Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

A network of orthogonal ribosome x mRNA pairs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

NOMAD: a versatile strategy for in vitro DNA manipulation applied to promoter analysis and vector design

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Production of the antimalarial drug precursor artemisinic acid in engineered yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspective

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Progress in modeling of protein structures and interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Detection of elementary flux modes in biochemical networks: a promising tool for pathway analysis and metabolic engineering.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

The FoldX web server: an online force field

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Toward controlling gene expression at will: selection and design of zinc finger domains recognizing each of the 5'-GNN-3' DNA target sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Rational design of artificial zinc-finger proteins using a nondegenerate recognition code table.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Generating a synthetic genome by whole genome assembly: phiX174 bacteriophage from synthetic oligonucleotides

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Removal of polymerase-produced mutant sequences from PCR products

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Reconstruction of genetic circuits

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Single-step assembly of a gene and entire plasmid from large numbers of oligodeoxyribonucleotides

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Accurate multiplex gene synthesis from programmable DNA microchips

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Modeling network dynamics: the lac operon, a case study.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Design principles for regulator gene expression in a repressible gene circuit.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Design of gene circuits: lessons from bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Genome engineering reveals large dispensable regions in Bacillus subtilis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Directed evolution of a genetic circuit

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Programmed population control by cell-cell communication and regulated killing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Two-step total gene synthesis method

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Minimization of the Escherichia coli genome using a Tn5-targeted Cre/loxP excision system

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

Microfluidic PicoArray synthesis of oligodeoxynucleotides and simultaneous assembling of multiple DNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL469

10.1093/BIOINFORMATICS/BTL469

21 January 2018

Identifiers

DOI

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journals/bioinformatics/HeinemannP06

15 August 2017

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DBLP Dataset 2021-01-02

release_gjirup7iefepdfyzmmlkmyiwly

28 January 2021

Fatcat ID

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Fatcat

https://api.fatcat.wiki/v0/release/gjirup7iefepdfyzmmlkmyiwly

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference