Repeat or not repeat?--Statistical validation of tandem repeat prediction in genomic sequences (Q36368731)

13 August 2017

Repeat or not repeat?--Statistical validation of tandem repeat prediction in genomic sequences (English)

1 reference

13 August 2017

0 references

1 reference

2

Andrey V Kajava

1 reference

13 August 2017

Elke Schaper

1

1 reference

13 August 2017

Alain Hauser

series ordinal

3

1 reference

13 August 2017

Maria Anisimova

series ordinal

4

1 reference

13 August 2017

language of work or name

English

0 references

publication date

25 August 2012

1 reference

13 August 2017

Nucleic Acids Research

1 reference

13 August 2017

40

1 reference

13 August 2017

20

1 reference

13 August 2017

10005-10017

1 reference

Creative Commons Attribution-NonCommercial 3.0 Unported

13 August 2017

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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NTRFinder: a software tool to find nested tandem repeats.

30 September 2017

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30 September 2017

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TRedD--a database for tandem repeats over the edit distance

30 September 2017

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T-REKS: identification of Tandem REpeats in sequences with a K-meanS based algorithm

30 September 2017

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INDELible: a flexible simulator of biological sequence evolution

30 September 2017

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Genesis, effects and fates of repeats in prokaryotic genomes.

30 September 2017

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Detecting short tandem repeats from genome data: opening the software black box.

30 September 2017

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Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis

30 September 2017

1 reference

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The conditioned reconstructed process

30 September 2017

1 reference

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Tandem repeats in human disorders: mechanisms and evolution

30 September 2017

1 reference

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An improved general amino acid replacement matrix

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488214

Origin and evolution of GALA-LRR, a new member of the CC-LRR subfamily: from plants to bacteria?

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488214

XSTREAM: a practical algorithm for identification and architecture modeling of tandem repeats in protein sequences

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488214

Recent progress in elucidating the structure, function and evolution of disease resistance genes in plants

30 September 2017

1 reference

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Evolution and diversification of lamprey antigen receptors: evidence for involvement of an AID-APOBEC family cytosine deaminase

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488214

Detecting microsatellites within genomes: significant variation among algorithms

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488214

Statistical tests to compare motif count exceptionalities

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488214

Structural models of amyloid-like fibrils

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488214

Structure, function, and amyloidogenesis of fungal prions: filament polymorphism and prion variants

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488214

Beta-structures in fibrous proteins.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488214

Role of SGT1 in resistance protein accumulation in plant immunity

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488214

Nonrandom distribution and frequencies of genomic and EST-derived microsatellite markers in rice, wheat, and barley

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488214

STAR: an algorithm to Search for Tandem Approximate Repeats

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488214

The role of titin in muscular disorders

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488214

mreps: Efficient and flexible detection of tandem repeats in DNA

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488214

Titin mutations as the molecular basis for dilated cardiomyopathy

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488214

Protein repeats: structures, functions, and evolution

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488214

Amino acid repeat patterns in protein sequences: their diversity and structural-functional implications

30 September 2017

1 reference

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Population structure and recent evolution of Plasmodium falciparum

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488214

A census of protein repeats

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488214

Tandem repeats finder: a program to analyze DNA sequences

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488214

Human autoantibodies reveal titin as a chromosomal protein

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488214

Destabilization of tracts of simple repetitive DNA in yeast by mutations affecting DNA mismatch repair

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488214

Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488214

Complex recombination events at the hypermutable minisatellite CEB1 (D2S90).

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488214

A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488214

A highly polymorphic locus in human DNA

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488214

Individual-specific ‘fingerprints’ of human DNA

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488214

Basic local alignment search tool

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488214

Slippage synthesis of simple sequence DNA

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488214

Tandem repeats in proteins: from sequence to structure

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488214

Rapid automatic detection and alignment of repeats in protein sequences.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3488214

Tracking repeats using significance and transitivity

28 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS726

De novo identification of highly diverged protein repeats by probabilistic consistency

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS726

Tandem repeats over the edit distance

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS726

SciRoKo: a new tool for whole genome microsatellite search and investigation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS726

Empirical and structural models for insertions and deletions in the divergent evolution of proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS726

Reconstructing the duplication history of tandemly repeated genes

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22923522

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Empirical analysis of protein insertions and deletions determining parameters for the correct placement of gaps in protein sequence alignments

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22923522

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Structural diversity of leucine-rich repeat proteins

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22923522

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKS726

1 reference

13 August 2017

1 reference

13 August 2017

PubMed publication ID

22923522

1 reference