Widespread somatic L1 retrotransposition occurs early during gastrointestinal cancer evolution (Q36084302)

12 August 2017

Widespread somatic L1 retrotransposition occurs early during gastrointestinal cancer evolution (English)

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12 August 2017

1

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12 August 2017

18

Bert Vogelstein

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Min-Sik Kim

Min-Sik Kim

6

0 references

Kenneth W. Kinzler

19

Kenneth W Kinzler

1 reference

Christine A Iacobuzio-Donahue

12 August 2017

17

Christine A Iacobuzio-Donahue

1 reference

12 August 2017

13

Ralph H Hruban

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12 August 2017

3

Laura D Wood

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12 August 2017

15

Katharine E Romans

1 reference

12 August 2017

5

Dongmei Xing

1 reference

12 August 2017

Alvin P Makohon-Moore

10

Alvin Makohon-Moore

1 reference

12 August 2017

7

Srikanth S Manda

1 reference

12 August 2017

Anthony Gacita

2

1 reference

12 August 2017

Florence Ma

4

1 reference

12 August 2017

Gabriela Abril

8

1 reference

12 August 2017

Gavin Pereira

9

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12 August 2017

Leendert H J Looijenga

11

1 reference

12 August 2017

Ad J M Gillis

12

1 reference

12 August 2017

Robert A Anders

14

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12 August 2017

Akhilesh Pandey

16

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12 August 2017

Haig H Kazazian

20

1 reference

12 August 2017

Szilvia Solyom

21

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12 August 2017

10 August 2015

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12 August 2017

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12 August 2017

25

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12 August 2017

10

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12 August 2017

1536-1545

1 reference

Retrotransposon insertions in the clonal evolution of pancreatic ductal adenocarcinoma

12 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4579339

Mobile element insertions are frequent in oesophageal adenocarcinomas and can mislead paired-end sequencing analysis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4579339

Ubiquitous L1 mosaicism in hippocampal neurons

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4579339

Mobile DNA in cancer. Extensive transduction of nonrepetitive DNA mediated by L1 retrotransposition in cancer genomes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4579339

SVA retrotransposon insertion-associated deletion represents a novel mutational mechanism underlying large genomic copy number changes with non-recurrent breakpoints.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4579339

A draft map of the human proteome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4579339

Somatic retrotransposition in human cancer revealed by whole-genome and exome sequencing

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4579339

Processed pseudogenes acquired somatically during cancer development

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4579339

Retrotransposition in tumors and brains

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4579339

Frequent L1 retrotranspositions originating from TTC28 in colorectal cancer.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4579339

Endogenous retrotransposition activates oncogenic pathways in hepatocellular carcinoma

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4579339

Retrotransposition of gene transcripts leads to structural variation in mammalian genomes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4579339

Half or more of the somatic mutations in cancers of self-renewing tissues originate prior to tumor initiation

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4579339

Single-neuron sequencing analysis of L1 retrotransposition and somatic mutation in the human brain

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4579339

Extensive somatic L1 retrotransposition in colorectal tumors

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4579339

Landscape of somatic retrotransposition in human cancers

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4579339

Active human retrotransposons: variation and disease

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4579339

Fast gapped-read alignment with Bowtie 2

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4579339

Somatic retrotransposition alters the genetic landscape of the human brain

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4579339

MS3 eliminates ratio distortion in isobaric multiplexed quantitative proteomics

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4579339

Natural mutagenesis of human genomes by endogenous retrotransposons

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4579339

High-throughput sequencing reveals extensive variation in human-specific L1 content in individual human genomes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4579339

L1 retrotransposition in human neural progenitor cells

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4579339

Krüppel-like factor 12 plays a significant role in poorly differentiated gastric cancer progression.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4579339

Universal sample preparation method for proteome analysis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4579339

Retrotransposons Revisited: The Restraint and Rehabilitation of Parasites

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4579339

Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4579339

The relationship between overexpression of glial cell-derived neurotrophic factor and its RET receptor with progression and prognosis of human pancreatic cancer

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4579339

Analysis of apoptosome dysregulation in pancreatic cancer and of its role in chemoresistance

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4579339

Somatic mosaicism in neuronal precursor cells mediated by L1 retrotransposition

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4579339

Disruption of the APC gene by a retrotransposal insertion of L1 sequence in a colon cancer

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4579339

Mobile interspersed repeats are major structural variants in the human genome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4579339

L1 retrotransposition can occur early in human embryonic development.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4579339

Primary immunodeficiency caused by an exonized retroposed gene copy inserted in the CYBB gene

23 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26260970

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.196238.115

1 reference

12 August 2017

1 reference

12 August 2017

1 reference