Dissecting the multistep reaction pathway of an RNA enzyme by single-molecule kinetic "fingerprinting". (Q35921595)

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30 December 2019

title

Dissecting the multistep reaction pathway of an RNA enzyme by single-molecule kinetic "fingerprinting" (English)

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30 December 2019

3

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4

Xiaowei Zhuang

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30 December 2019

author name string

Shixin Liu

series ordinal

1

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30 December 2019

Gregory Bokinsky

series ordinal

2

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language of work or name

English

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publication date

11 May 2007

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Proceedings of the National Academy of Sciences of the United States of America

30 December 2019

published in

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volume

104

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30 December 2019

issue

31

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page(s)

12634-12639

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Trapped water molecules are essential to structural dynamics and function of a ribozyme

30 December 2019

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937518

Two distinct binding modes of a protein cofactor with its target RNA.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937518

Analysis of single-molecule FRET trajectories using hidden Markov modeling

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937518

Single-molecule RNA science

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937518

Freely diffusing single hairpin ribozymes provide insights into the role of secondary structure and partially folded states in RNA folding

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937518

Single-molecule enzymology of RNA: essential functional groups impact catalysis from a distance

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937518

A four-way junction accelerates hairpin ribozyme folding via a discrete intermediate

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937518

Single-molecule transition-state analysis of RNA folding

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937518

Transition state stabilization by a catalytic RNA

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937518

Correlating structural dynamics and function in single ribozyme molecules

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937518

Single-molecule fluorescence resonance energy transfer

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937518

Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937518

Measuring conformational dynamics of biomolecules by single molecule fluorescence spectroscopy

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937518

Structure and function of the hairpin ribozyme

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937518

Tertiary structure formation in the hairpin ribozyme monitored by fluorescence resonance energy transfer

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937518

The tertiary structure of the hairpin ribozyme is formed through a slow conformational search

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937518

Stability of hairpin ribozyme tertiary structure is governed by the interdomain junction

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937518

Kinetics and thermodynamics of intermolecular catalysis by hairpin ribozymes

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1937518

Kinetic mechanism of the hairpin ribozyme. Identification and characterization of two nonexchangeable conformations

24 September 2018

1 reference

12 December 2020

The hairpin ribozyme: structure, assembly and catalysis

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12 December 2020

The internal equilibrium of the hairpin ribozyme: temperature, ion and pH effects

1 reference

12 December 2020

Observation of internal cleavage and ligation reactions of a ribozyme

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12 December 2020

Folding of the hairpin ribozyme in its natural conformation achieves close physical proximity of the loops

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0610597104

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0 references

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30 December 2019

PubMed publication ID

17496145

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