High-throughput transcriptomics reveals common and strain-specific responses of human macrophages to infection with Mycobacterium abscessus Smooth and Rough variants (Q35865474)

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scientific article published on 9 December 2015

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English	High-throughput transcriptomics reveals common and strain-specific responses of human macrophages to infection with Mycobacterium abscessus Smooth and Rough variants	scientific article published on 9 December 2015

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scholarly article

1 reference

Europe PubMed Central

10 August 2017

High-throughput transcriptomics reveals common and strain-specific responses of human macrophages to infection with Mycobacterium abscessus Smooth and Rough variants (English)

1 reference

Europe PubMed Central

10 August 2017

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transcriptomics

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based on heuristic

inferred from title

Mycobacterium abscessus

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based on heuristic

inferred from title

Aleksandra A Miranda-CasoLuengo

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Aleksandra A Miranda-CasoLuengo

3

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Kévin Rue-Albrecht

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Kévin Rue-Albrecht

5

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Brendan J Loftus

7

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David E. MacHugh

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David E MacHugh

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Anna Aulicino

1

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author name string

Adam M Dinan

2

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Europe PubMed Central

10 August 2017

John A Browne

4

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Europe PubMed Central

10 August 2017

language of work or name

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publication date

9 December 2015

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Europe PubMed Central

10 August 2017

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Europe PubMed Central

10 August 2017

16

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Europe PubMed Central

10 August 2017

1046

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Europe PubMed Central

10 August 2017

describes a project that uses

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Cytoscape

2 references

Europe PubMed Central

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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DEseq

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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edgeR

Bioconductor package edgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

Mycobacterial infection induces a specific human innate immune response

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4674915

11 July 2018

bacterial infection drives the expression dynamics of microRNAs and their isomiRs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4674915

11 July 2018

Mycobacteria, metals, and the macrophage

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4674915

11 July 2018

Host ICAMs play a role in cell invasion by Mycobacterium tuberculosis and Plasmodium falciparum

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Profiling the circulating miRNAs in mice exposed to gram-positive and gram-negative bacteria by Illumina small RNA deep sequencing

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Differential transcriptional response in macrophages infected with cell wall deficient versus normal Mycobacterium Tuberculosis

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Key Hub and Bottleneck Genes Differentiate the Macrophage Response to Virulent and Attenuated Mycobacterium bovis

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HTSeq--a Python framework to work with high-throughput sequencing data

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Biological network exploration with Cytoscape 3

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ToppMiR: ranking microRNAs and their mRNA targets based on biological functions and context

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11 July 2018

Mycobacterium abscessus cording prevents phagocytosis and promotes abscess formation.

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11 July 2018

Identification of latent tuberculosis infection-related microRNAs in human U937 macrophages expressing Mycobacterium tuberculosis Hsp16.3.

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A genomic portrait of the genetic architecture and regulatory impact of microRNA expression in response to infection

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11 July 2018

Deregulated microRNAs in CD4+ T cells from individuals with latent tuberculosis versus active tuberculosis

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miRNA signatures in sera of patients with active pulmonary tuberculosis

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The miR-126-VEGFR2 axis controls the innate response to pathogen-associated nucleic acids

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Role of miR-181 family in regulating vascular inflammation and immunity

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11 July 2018

Transcriptome Analysis Reveals Novel Entry Mechanisms and a Central Role of SRC in Host Defense during High Multiplicity Mycobacterial Infection

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Mycobacterium abscessus induces a limited pattern of neutrophil activation that promotes pathogen survival

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Transcription factor nuclear factor erythroid-2 mediates expression of the cytokine interleukin 8, a known predictor of inferior outcome in patients with myeloproliferative neoplasms

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STAR: ultrafast universal RNA-seq aligner

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An interferon-related signature in the transcriptional core response of human macrophages to Mycobacterium tuberculosis infection

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The mammalian microRNA response to bacterial infections

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11 July 2018

Mycobacterium tuberculosis activates the DNA-dependent cytosolic surveillance pathway within macrophages

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11 July 2018

Global gene expression and systems biology analysis of bovine monocyte-derived macrophages in response to in vitro challenge with Mycobacterium bovis

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11 July 2018

Mycobacterium abscessus: a new antibiotic nightmare

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4674915

11 July 2018

Strain specific transcriptional response in Mycobacterium tuberculosis infected macrophages

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11 July 2018

Mycobacterium abscessus glycopeptidolipid prevents respiratory epithelial TLR2 signaling as measured by HβD2 gene expression and IL-8 release

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Express path analysis identifies a tyrosine kinase Src-centric network regulating divergent host responses to Mycobacterium tuberculosis infection

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Mycobacterial p(1)-type ATPases mediate resistance to zinc poisoning in human macrophages

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Interferon regulatory factor-1 (IRF-1) shapes both innate and CD8(+) T cell immune responses against West Nile virus infection

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A review of metallothionein isoforms and their role in pathophysiology

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Nitric oxide and redox mechanisms in the immune response

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Differential expression analysis for sequence count data

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Mammalian microRNAs predominantly act to decrease target mRNA levels

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The nuclear factor NF-kappaB pathway in inflammation

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miR-126 is downregulated in cystic fibrosis airway epithelial cells and regulates TOM1 expression

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Chronic Mycobacterium abscessus infection and lung function decline in cystic fibrosis

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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

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Mycobacterium avium glycopeptidolipids require specific acetylation and methylation patterns for signaling through toll-like receptor 2.

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CREB, ATF, and AP-1 transcription factors regulate IFN-gamma secretion by human T cells in response to mycobacterial antigen

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Identification and characterization of the genetic changes responsible for the characteristic smooth-to-rough morphotype alterations of clinically persistent Mycobacterium abscessus

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Phagocytosis and cytokine response to rough and smooth colony variants of Mycobacterium abscessus by human peripheral blood mononuclear cells

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Importance of T cells, gamma interferon, and tumor necrosis factor in immune control of the rapid grower Mycobacterium abscessus in C57BL/6 mice

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Clinical features of pulmonary disease caused by rapidly growing mycobacteria. An analysis of 154 patients

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Cytokine patterns in tuberculous and sarcoid granulomas: correlations with histopathologic features of the granulomatous response

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Identifiers

10.1186/S12864-015-2246-1

1 reference

Europe PubMed Central

10 August 2017

1 reference

Europe PubMed Central

10 August 2017

1 reference

Europe PubMed Central

10 August 2017

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