A role for palindromic structures in the cis-region of maize Sirevirus LTRs in transposable element evolution and host epigenetic response. (Q35859567)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26631490%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

title

A role for palindromic structures in the cis-region of maize Sirevirus LTRs in transposable element evolution and host epigenetic response (English)

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1 March 2020

1

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6

Brandon S Gaut

1 reference

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1 March 2020

author name string

Concepcion M Diez

2

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1 March 2020

Shohei Takuno

3

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1 March 2020

Vojtech Bystry

4

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1 March 2020

Nikos Darzentas

5

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1 March 2020

publication date

2 December 2015

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1 March 2020

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1 March 2020

volume

26

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1 March 2020

issue

2

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1 March 2020

page(s)

226-237

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Silencing of active transposable elements in plants

1 March 2020

cites work

1 reference

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ARGONAUTE 6 bridges transposable element mRNA-derived siRNAs to the establishment of DNA methylation

11 July 2018

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Genomic distribution of H3K9me2 and DNA methylation in a maize genome

11 July 2018

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RNA-directed DNA methylation: an epigenetic pathway of increasing complexity

11 July 2018

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Three groups of transposable elements with contrasting copy number dynamics and host responses in the maize (Zea mays ssp. mays) genome.

11 July 2018

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miRNAs trigger widespread epigenetically activated siRNAs from transposons in Arabidopsis.

11 July 2018

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The diversity, biogenesis, and activities of endogenous silencing small RNAs in Arabidopsis

11 July 2018

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SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation

11 July 2018

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Proposed mechanism for the initiation of transposable element silencing by the RDR6-directed DNA methylation pathway

11 July 2018

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Conservation and divergence of transcriptomic and epigenomic variation in maize hybrids

11 July 2018

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The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA.

11 July 2018

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Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1

11 July 2018

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Arguments for standardizing transposable element annotation in plant genomes

11 July 2018

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11 July 2018

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The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin

11 July 2018

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Sirevirus LTR retrotransposons: phylogenetic misconceptions in the plant world.

11 July 2018

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Classification and comparison of small RNAs from plants

11 July 2018

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11 July 2018

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Gene body methylation is conserved between plant orthologs and is of evolutionary consequence

11 July 2018

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CHH islands: de novo DNA methylation in near-gene chromatin regulation in maize

11 July 2018

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Repeat associated small RNAs vary among parents and following hybridization in maize

11 July 2018

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MASiVEdb: the Sirevirus Plant Retrotransposon Database

11 July 2018

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Strategies for silencing and escape: the ancient struggle between transposable elements and their hosts

11 July 2018

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The turbulent life of Sirevirus retrotransposons and the evolution of the maize genome: more than ten thousand elements tell the story.

11 July 2018

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Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata

11 July 2018

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Epigenetic reprogramming during vegetative phase change in maize

11 July 2018

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Small RNAs, DNA methylation and transposable elements in wheat

11 July 2018

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Patching gaps in plant genomes results in gene movement and erosion of colinearity

11 July 2018

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11 July 2018

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Conservation and divergence of methylation patterning in plants and animals

11 July 2018

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Highly conserved motifs in non-coding regions of Sirevirus retrotransposons: the key for their pattern of distribution within and across plants?

11 July 2018

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11 July 2018

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A genome-wide characterization of microRNA genes in maize

11 July 2018

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11 July 2018

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Epigenetic reprogramming and small RNA silencing of transposable elements in pollen

11 July 2018

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11 July 2018

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Sustained retrotransposition is mediated by nucleotide deletions and interelement recombinations.

11 July 2018

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Distinct size distribution of endogeneous siRNAs in maize: Evidence from deep sequencing in the mop1-1 mutant

11 July 2018

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11 July 2018

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Highly integrated single-base resolution maps of the epigenome in Arabidopsis

11 July 2018

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Rapid recent growth and divergence of rice nuclear genomes

11 July 2018

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Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice

11 July 2018

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Mobilization of transposons by a mutation abolishing full DNA methylation in Arabidopsis

11 July 2018

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The evolutionary analysis of the Tnt1 retrotransposon in Nicotiana species reveals the high variability of its regulatory sequences.

11 July 2018

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cis-acting regulatory regions in the long terminal repeat of simian foamy virus type 1

11 July 2018

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Reconstructing de novo silencing of an active plant retrotransposon.

11 July 2018

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An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress.

24 September 2018

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MASiVE: Mapping and Analysis of Sirevirus Elements in plant genome sequences.

24 September 2018

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Bifurcation and enhancement of autonomous-nonautonomous retrotransposon partnership through LTR Swapping in soybean

24 September 2018

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Genome-wide and organ-specific landscapes of epigenetic modifications and their relationships to mRNA and small RNA transcriptomes in maize.

24 September 2018

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24 September 2018

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Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning

24 September 2018

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Heritable transposon silencing initiated by a naturally occurring transposon inverted duplication

24 September 2018

1 reference

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Retrolyc1 subfamilies defined by different U3 LTR regulatory regions in the Lycopersicon genus

24 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26631490

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

LTR retrotransposons, handy hitchhikers of plant regulation and stress response

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26631490

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.193763.115

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26631490%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26631490%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

1 reference