Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata (Q34573233)

3 August 2017

Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata (English)

1 reference

3 August 2017

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5

1 reference

3 August 2017

Lisa M Smith

2

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Ya-Long Guo

object named as

Ya-Long Guo

series ordinal

3

0 references

Brandon S Gaut

series ordinal

6

object named as

Brandon S Gaut

1 reference

3 August 2017

Jesse D Hollister

1

1 reference

PubMed ID

21252301

3 August 2017

Felix Ott

series ordinal

4

1 reference

PubMed ID

21252301

3 August 2017

language of work or name

English

0 references

publication date

20 January 2011

1 reference

Proceedings of the National Academy of Sciences of the United States of America

3 August 2017

1 reference

3 August 2017

108

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3 August 2017

6

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3 August 2017

2322-2327

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Dated molecular phylogenies indicate a Miocene origin for Arabidopsis thaliana

3 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038775

A triptych of the evolution of plant transposable elements

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038775

Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038775

Conservation and divergence of methylation patterning in plants and animals

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038775

Genome-wide evolutionary analysis of eukaryotic DNA methylation.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038775

The evolution of transposable elements in natural populations of self-fertilizing Arabidopsis thaliana and its outcrossing relative Arabidopsis lyrata

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038775

The rate and molecular spectrum of spontaneous mutations in Arabidopsis thaliana

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038775

Loss of RNA-dependent RNA polymerase 2 (RDR2) function causes widespread and unexpected changes in the expression of transposons, genes, and 24-nt small RNAs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038775

Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expression

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038775

RNA-mediated chromatin-based silencing in plants

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038775

The effect of transposable element insertions on gene expression evolution in rodents

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038775

Epigenetic regulation of transposable elements in plants

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038775

Sequencing of natural strains of Arabidopsis thaliana with short reads

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038775

Demography and weak selection drive patterns of transposable element diversity in natural populations of Arabidopsis lyrata

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038775

At-TAX: a whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038775

Tandem repeats upstream of the Arabidopsis endogene SDC recruit non-CG DNA methylation and initiate siRNA spreading.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038775

Highly integrated single-base resolution maps of the epigenome in Arabidopsis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038775

Long-term evolution of transposable elements

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038775

Genome-wide analysis of DNA methylation patterns

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038775

Transposable elements and the epigenetic regulation of the genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038775

Role of RNA polymerase IV in plant small RNA metabolism

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038775

Two-step recruitment of RNA-directed DNA methylation to tandem repeats

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038775

The ABC's of comparative genomics in the Brassicaceae: building blocks of crucifer genomes.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038775

Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038775

Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038775

Meiotically stable natural epialleles of Sadhu, a novel Arabidopsis retroposon

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038775

RNA silencing and genome regulation.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038775

siRNAs targeting an intronic transposon in the regulation of natural flowering behavior in Arabidopsis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038775

Role of transposable elements in heterochromatin and epigenetic control

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038775

Chromosome organization and genic expression

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038775

A mutation that prevents paramutation in maize also reverses Mutator transposon methylation and silencing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038775

Population dynamics of an Ac-like transposable element in self- and cross-pollinating arabidopsis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038775

Transposon dynamics and the breeding system

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038775

The paleontology of intergene retrotransposons of maize.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038775

Transposable elements generate novel spatial patterns of gene expression in Antirrhinum majus.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038775

Bursts of retrotransposition reproduced in Arabidopsis

7 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1018222108

MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1018222108

Transposable elements: insertion pattern and impact on gene expression evolution in hominids.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1018222108

Population and evolutionary dynamics of Helitron transposable elements in Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1018222108

Heritable transposon silencing initiated by a naturally occurring transposon inverted duplication

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1018222108

Quantitative RNA expression analysis with Affymetrix Tiling 1.0R arrays identifies new E2F target genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1018222108

Breakdown of self-incompatibility in the perennial Arabidopsis lyrata (Brassicaceae) and its genetic consequences.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038775

Unexpected consequences of a sudden and massive transposon amplification on rice gene expression

27 October 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1018222108

The epigenetic landscape of plants

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21252301

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Transposable element number in mixed mating populations

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21252301

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

One-way control of FWA imprinting in Arabidopsis endosperm by DNA methylation

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21252301

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1018222108

1 reference

3 August 2017

0 references

1 reference

3 August 2017

1 reference

PubMed ID

21252301