Geometry of the Gene Expression Space of Individual Cells (Q35688096)

9 August 2017

Geometry of the Gene Expression Space of Individual Cells (English)

1 reference

9 August 2017

5

1 reference

9 August 2017

Avi Mayo

6

0 references

Uri Alon

series ordinal

9

object named as

Uri Alon

1 reference

9 August 2017

8

Tomer Kalisky

1 reference

9 August 2017

2

Pablo Szekely

1 reference

9 August 2017

4

Hila Sheftel

1 reference

9 August 2017

1

Yael Korem

1 reference

9 August 2017

Yuval Hart

3

1 reference

PubMed ID

26161936

9 August 2017

Michael E Rothenberg

series ordinal

7

1 reference

9 August 2017

10 July 2015

1 reference

PLOS Computational Biology

9 August 2017

1 reference

9 August 2017

11

1 reference

9 August 2017

e1004224

1 reference

9 August 2017

7

1 reference

Creative Commons Attribution 4.0 International

9 August 2017

start time

10 July 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

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Inferring biological tasks using Pareto analysis of high-dimensional data

27 July 2018

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Unbiased classification of sensory neuron types by large-scale single-cell RNA sequencing

27 July 2018

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Repair and regeneration of the respiratory system: complexity, plasticity, and mechanisms of lung stem cell function

27 July 2018

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Modeling bi-modality improves characterization of cell cycle on gene expression in single cells

27 July 2018

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Stem cell plasticity. Plasticity of epithelial stem cells in tissue regeneration

27 July 2018

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Development and function of dendritic cell subsets

27 July 2018

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Single-cell trajectory detection uncovers progression and regulatory coordination in human B cell development

27 July 2018

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The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

27 July 2018

1 reference

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Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types

27 July 2018

1 reference

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Intestinal crypt homeostasis revealed at single-stem-cell level by in vivo live imaging.

27 July 2018

1 reference

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The promise of single-cell sequencing

27 July 2018

1 reference

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Mathematical model of adult stem cell regeneration with cross-talk between genetic and epigenetic regulation

27 July 2018

1 reference

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Developmental bias in the evolution of phalanges

27 July 2018

1 reference

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Optofluidic cell selection from complex microbial communities for single-genome analysis

27 July 2018

1 reference

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Archetypal analysis of diverse Pseudomonas aeruginosa transcriptomes reveals adaptation in cystic fibrosis airways

27 July 2018

1 reference

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Evolutionary tradeoffs between economy and effectiveness in biological homeostasis systems

27 July 2018

1 reference

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Mapping differentiation under mixed culture conditions reveals a tunable continuum of T cell fates

27 July 2018

1 reference

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The intestinal crypt, a prototype stem cell compartment

27 July 2018

1 reference

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The geometry of the Pareto front in biological phenotype space

27 July 2018

1 reference

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Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells

27 July 2018

1 reference

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The geometry of locomotive behavioral states in C. elegans

27 July 2018

1 reference

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The dendritic cell lineage: ontogeny and function of dendritic cells and their subsets in the steady state and the inflamed setting

27 July 2018

1 reference

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Dynamics extracted from fixed cells reveal feedback linking cell growth to cell cycle

27 July 2018

1 reference

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Critical assessment of automated flow cytometry data analysis techniques.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

Data exploration, quality control and testing in single-cell qPCR-based gene expression experiments.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

The Lgr5 intestinal stem cell signature: robust expression of proposed quiescent '+4' cell markers

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

Microfluidic single-cell real-time PCR for comparative analysis of gene expression patterns

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

Cytometry by time-of-flight shows combinatorial cytokine expression and virus-specific cell niches within a continuum of CD8+ T cell phenotypes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

Single-cell dissection of transcriptional heterogeneity in human colon tumors

27 July 2018

1 reference

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Modeling transcriptional networks in Drosophila development at multiple scales

27 July 2018

1 reference

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Stem cell self-renewal in intestinal crypt

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

Universal patterns of stem cell fate in cycling adult tissues

27 July 2018

1 reference

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Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq

27 July 2018

1 reference

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Dendritic cell apoptosis: regulation of tolerance versus immunity

27 July 2018

1 reference

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A continuum of cell states spans pluripotency and lineage commitment in human embryonic stem cells

27 July 2018

1 reference

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Unbiased reconstruction of a mammalian transcriptional network mediating pathogen responses

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

The ets-domain transcription factor Spdef promotes maturation of goblet and paneth cells in the intestinal epithelium

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

mRNA-Seq whole-transcriptome analysis of a single cell

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

Transcription factor achaete scute-like 2 controls intestinal stem cell fate

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

Identification and functional characterization of NODAL rare variants in heterotaxy and isolated cardiovascular malformations

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

Establishment of a normal hematopoietic and leukemia stem cell hierarchy.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

Stem cells, self-renewal, and differentiation in the intestinal epithelium

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

MS4A12 is a colon-selective store-operated calcium channel promoting malignant cell processes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

Identification of stem cells in small intestine and colon by marker gene Lgr5

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

Gene expression patterns of human colon tops and basal crypts and BMP antagonists as intestinal stem cell niche factors

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

Gene expression in TGFbeta-induced epithelial cell differentiation in a three-dimensional intestinal epithelial cell differentiation model

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

c-Myc is required for the formation of intestinal crypts but dispensable for homeostasis of the adult intestinal epithelium

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

Gene regulation at the single-cell level

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

Differential expression of aquaporin 8 in human colonic epithelial cells and colorectal tumors

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

Loss-of-function mutations in the EGF-CFC gene CFC1 are associated with human left-right laterality defects

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

Immunobiology of dendritic cells

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

Human UDP-glucuronosyltransferases: metabolism, expression, and disease

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

The genetic program of hematopoietic stem cells

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

Cluster analysis and display of genome-wide expression patterns

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

Dendritic cells and the control of immunity

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

Mutations of the Down-regulated in adenoma (DRA) gene cause congenital chloride diarrhoea

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

Isolation and characterization of the CRIPTO autosomal gene and its X-linked related sequence

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

Metabolic zonation of the liver: regulation and implications for liver function

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

Caste and ecology in the social insects.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

Single-cell transcriptome analysis reveals dynamic changes in lncRNA expression during reprogramming

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

Robust cre-mediated recombination in small intestinal stem cells utilizing the olfm4 locus

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

Single-cell RNA-seq reveals dynamic paracrine control of cellular variation

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

Dissecting genomic diversity, one cell at a time

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

Can cell mortality determine division of labor in tissue organization?

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

Evolutionary trade-offs, Pareto optimality, and the geometry of phenotype space.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

Identification of a cKit(+) colonic crypt base secretory cell that supports Lgr5(+) stem cells in mice

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

Tmem176B and Tmem176A are associated with the immature state of dendritic cells

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

SAM pointed domain ETS factor (SPDEF) regulates terminal differentiation and maturation of intestinal goblet cells.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

Serrated adenoma of the colorectum undergoes a proliferation versus differentiation process: new conceptual interpretation of morphogenesis.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

MBLR, a new RING finger protein resembling mammalian Polycomb gene products, is regulated by cell cycle-dependent phosphorylation

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

Wnt/beta-catenin/Tcf signaling induces the transcription of Axin2, a negative regulator of the signaling pathway

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

Nodal is a novel TGF-beta-like gene expressed in the mouse node during gastrulation

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498931

Archetypal analysis for machine learning and data mining

25 September 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004224

Archetypal analysis for machine learning

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004224

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004224

On lines and planes of closest fit to systems of points in space

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004224

Individual Comparisons by Ranking Methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004224

Upon dendritic cell (DC) activation chemokines and chemokine receptor expression are rapidly regulated for recruitment and maintenance of DC at the inflammatory site

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004224

Evaluation of Phagocytic Activity in Human Monocyte-Derived Dendritic Cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004224

CD14 regulates the dendritic cell life cycle after LPS exposure through NFAT activation

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004224

Transmembrane proteins of tight junctions

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26161936

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Cdkn1a deletion improves stem cell function and lifespan of mice with dysfunctional telomeres without accelerating cancer formation

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26161936

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PCBI.1004224

1 reference

journals/ploscb/KoremSHSHMRKA15

9 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

9 August 2017

1 reference

PubMed ID

26161936