A review of software for analyzing molecular sequences (Q35447347)

8 August 2017

2 references

19 September 2019

10 November 2020

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A review of software for analyzing molecular sequences (English)

1 reference

biomedical investigative technique

8 August 2017

1 reference

19 September 2019

1 reference

10 November 2020

Haema Nilakanta

1

1 reference

8 August 2017

Kimberly L Drews

2

1 reference

8 August 2017

Suzanne Firrell

3

1 reference

8 August 2017

Mary A Foulkes

4

1 reference

8 August 2017

Kathleen A Jablonski

5

1 reference

8 August 2017

24 November 2014

3 references

8 August 2017

19 September 2019

10 November 2020

3 references

8 August 2017

19 September 2019

10 November 2020

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8 August 2017

830

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Creative Commons Attribution

8 August 2017

2 references

19 September 2019

10 November 2020

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https://scigraph.springernature.com/pub.10.1186/1756-0500-7-830

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cites work

VAMPS: a website for visualization and analysis of microbial population structures

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Ribosomal Database Project: data and tools for high throughput rRNA analysis

12 July 2018

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The Genboree Microbiome Toolset and the analysis of 16S rRNA microbial sequences

12 July 2018

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Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies

12 July 2018

1 reference

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Experimental and analytical tools for studying the human microbiome

12 July 2018

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Advancing analytical algorithms and pipelines for billions of microbial sequences

12 July 2018

1 reference

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DECIPHER, a search-based approach to chimera identification for 16S rRNA sequences

12 July 2018

1 reference

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Bayesian community-wide culture-independent microbial source tracking

12 July 2018

1 reference

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UCHIME improves sensitivity and speed of chimera detection

12 July 2018

1 reference

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Removing noise from pyrosequenced amplicons

12 July 2018

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Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

12 July 2018

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Introducing W.A.T.E.R.S.: a workflow for the alignment, taxonomy, and ecology of ribosomal sequences

12 July 2018

1 reference

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QIIME allows analysis of high-throughput community sequencing data

12 July 2018

1 reference

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The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants

12 July 2018

1 reference

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Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

12 July 2018

1 reference

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New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras

12 July 2018

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UniFrac: a new phylogenetic method for comparing microbial communities

12 July 2018

1 reference

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At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4258797

Bellerophon: a program to detect chimeric sequences in multiple sequence alignments

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4258797

A new version of the RDP (Ribosomal Database Project).

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4258797

Base-calling of automated sequencer traces using phred. II. Error probabilities

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4258797

Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4258797

Evaluating putative chimeric sequences from PCR-amplified products.

12 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1756-0500-7-830

An open source chimera checker for the fungal ITS region

21 January 2018

1 reference

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https://api.crossref.org/works/10.1186%2F1756-0500-7-830

The importance of accounting for correlated observations

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4258797

26 September 2018

Identifiers

DOI

10.1186/1756-0500-7-830

1 reference

Dimensions Publication ID

8 August 2017

0 references

1 reference

8 August 2017

1 reference