Deciphering chicken gut microbial dynamics based on high-throughput 16S rRNA metagenomics analyses (Q35213234)

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3 March 2020

title

Deciphering chicken gut microbial dynamics based on high-throughput 16S rRNA metagenomics analyses (English)

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3 March 2020

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3

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3 March 2020

Han Ming Gan

4

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3 March 2020

author name string

Mohd Asrore Mohd Shaufi

1

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3 March 2020

Chin Chin Sieo

2

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3 March 2020

Yin Wan Ho

5

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publication date

26 February 2015

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3 March 2020

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3 March 2020

volume

7

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3 March 2020

page(s)

4

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Creative Commons Attribution 4.0 International

3 March 2020

copyright license

start time

26 February 2015

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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describes a project that uses

phyloseq

object named as

Phyloseq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/s13099-015-0051-7

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Modulations of the chicken cecal microbiome and metagenome in response to anticoccidial and growth promoter treatment

28 July 2018

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Colonization factors of Campylobacter jejuni in the chicken gut

28 July 2018

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Key two-component regulatory systems that control biofilm formation in Pseudomonas aeruginosa

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Enterotypes of the human gut microbiome

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Generation of multimillion-sequence 16S rRNA gene libraries from complex microbial communities by assembling paired-end illumina reads

28 July 2018

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Influence of antimicrobial feed additives on broiler commensal posthatch gut microbiota development and performance

28 July 2018

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Assessing and improving methods used in operational taxonomic unit-based approaches for 16S rRNA gene sequence analysis

28 July 2018

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28 July 2018

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Comparative metagenomics reveals host specific metavirulomes and horizontal gene transfer elements in the chicken cecum microbiome

28 July 2018

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Indigenous bacteria and bacterial metabolic products in the gastrointestinal tract of broiler chickens

28 July 2018

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28 July 2018

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Bacteroides barnesiae sp. nov., Bacteroides salanitronis sp. nov. and Bacteroides gallinarum sp. nov., isolated from chicken caecum

28 July 2018

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28 July 2018

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Identification and functional characterization of chicken toll-like receptor 5 reveals a fundamental role in the biology of infection with Salmonella enterica serovar typhimurium

28 July 2018

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Identification of host-specific colonization factors of Salmonella enterica serovar Typhimurium.

28 July 2018

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Molecular ecological analysis of the gastrointestinal microbiota: a review.

28 July 2018

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Diversity and Succession of the Intestinal Bacterial Community of the Maturing Broiler Chicken

28 July 2018

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16S rRNA-based analysis of microbiota from the cecum of broiler chickens

28 July 2018

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28 July 2018

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Isolation, Culture Characteristics, and Identification of Anaerobic Bacteria from the Chicken Cecum

28 July 2018

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The mRNA expression of amino acid transporters, aminopeptidase N, and the di- and tri-peptide transporter PepT1 in the embryo of the domesticated chicken (Gallus gallus) shows developmental regulation

28 July 2018

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Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform.

26 September 2018

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Species identification and profiling of complex microbial communities using shotgun Illumina sequencing of 16S rRNA amplicon sequences

26 September 2018

1 reference

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Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4372169

Intestinal microbiota associated with differential feed conversion efficiency in chickens

26 September 2018

1 reference

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Metagenomic analyses: past and future trends

26 September 2018

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Growth phase-dependent activation of the DccRS regulon of Campylobacter jejuni.

26 September 2018

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Exposure of different bacterial inocula to newborn chicken affects gut microbiota development and ileum gene expression

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4372169

Effects of zinc bacitracin, bird age and access to range on bacterial microbiota in the ileum and caeca of broiler chickens.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4372169

A detailed analysis of 16S ribosomal RNA gene segments for the diagnosis of pathogenic bacteria

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4372169

16S rRNA gene-based analysis of mucosa-associated bacterial community and phylogeny in the chicken gastrointestinal tracts: from crops to ceca.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4372169

Microflora ecology of the chicken intestine using 16S ribosomal DNA primers.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4372169

Effects of dietary fat source and subtherapeutic levels of antibiotic on the bacterial community in the ileum of broiler chickens at various ages

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4372169

Diversity and phylogenetic analysis of bacteria in the mucosa of chicken ceca and comparison with bacteria in the cecal lumen.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4372169

Spatial and temporal variation of the intestinal bacterial community in commercially raised broiler chickens during growth

26 September 2018

1 reference

12 December 2020

High through put 16S rRNA gene-based pyrosequencing analysis of the fecal microbiota of high FCR and low FCR broiler growers

1 reference

12 December 2020

The intestinal flora of the chicken in the period 2 to 6 weeks of age, with particular reference to the anaerobic bacteria

1 reference

12 December 2020

Molecular analysis of bacterial populations in the ileum of broiler chickens and comparison with bacteria in the cecum

1 reference

12 December 2020

Microbial community composition of the ileum and cecum of broiler chickens as revealed by molecular and culture-based techniques

1 reference

12 December 2020

10.1186/S13099-015-0051-7

Identifiers

DOI

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Dimensions Publication ID

3 March 2020

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25806087%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25806087%20AND%20SRC:MED&resulttype=core&format=json