DNA supercoiling and transcription control: a model from the study of suppression of the leu-500 mutation in Salmonella typhimurium topA- strains (Q35185675)

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English	DNA supercoiling and transcription control: a model from the study of suppression of the leu-500 mutation in Salmonella typhimurium topA- strains	scientific article

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scholarly article

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Europe PubMed Central

7 August 2017

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Europe PubMed Central

DNA supercoiling and transcription control: a model from the study of suppression of the leu-500 mutation in Salmonella typhimurium topA- strains (English)

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Europe PubMed Central

7 August 2017

Salmonella Typhimurium

object named as

Salmonella typhimurium

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author name string

Hai-Young Wu

1

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Europe PubMed Central

7 August 2017

Ming Fang

2

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Europe PubMed Central

7 August 2017

publication date

1 January 2003

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Europe PubMed Central

7 August 2017

Progress in Molecular Biology and Translational Science

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Europe PubMed Central

7 August 2017

73

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Europe PubMed Central

7 August 2017

43-68

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Europe PubMed Central

7 August 2017

DNA topology and a minimal set of basal factors for transcription by RNA polymerase II

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Presence of negative torsional tension in the promoter region of the transcriptionally poised dihydrofolate reductase gene in vivo

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7 January 2021

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Localized torsional tension in the DNA of human cells

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7 January 2021

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DNA supercoiling and prokaryotic transcription

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7 January 2021

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DNA topoisomerases

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Topological unwinding of strong and weak promoters by RNA polymerase. A comparison between the lac wild-type and the UV5 sites of Escherichia coli

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RNA polymerase unwinds an 11-base pair segment of a phage T7 promoter

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YY1 transcriptional initiator: protein interactions and association with a DNA site containing unpaired strands

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7 January 2021

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TATA box DNA deformation with and without the TATA box-binding protein

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Saturation mutagenesis of the haloarchaeal bop gene promoter: identification of DNA supercoiling sensitivity sites and absence of TFB recognition element and UAS enhancer activity

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DNA supercoiling and transcription in Escherichia coli: The FIS connection

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FIS modulates the kinetics of successive interactions of RNA polymerase with the core and upstream regions of the tyrT promoter

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7 January 2021

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Supercoiling response of the lac ps promoter in vitro

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7 January 2021

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All three elements of the lac ps promoter mediate its transcriptional response to DNA supercoiling

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Modulation of transcription by DNA supercoiling: a deletion analysis of the Escherichia coli gyrA and gyrB promoters

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Fusions of the Escherichia coli gyrA and gyrB control regions to the galactokinase gene are inducible by coumermycin treatment

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Effect of topological constraint on transcription of ribosomal DNA in Xenopus oocytes. Comparison of plasmid and endogenous genes

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7 January 2021

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Gyrase inhibitors can increase gyrA expression and DNA supercoiling

1 reference

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7 January 2021

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A physiological role for DNA supercoiling in the osmotic regulation of gene expression in S. typhimurium and E. coli

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7 January 2021

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Escherichia coli DNA topoisomerase I mutants have compensatory mutations in DNA gyrase genes.

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7 January 2021

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Silencing of Escherichia coli bgl promoter by flanking sequence elements.

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7 January 2021

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Antagonistic control of the Escherichia coli bgl promoter by FIS and CAP in vitro

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7 January 2021

based on heuristic

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Lac and lambda repressors relieve silencing of the Escherichia coli bgl promoter. Activation by alteration of a repressing nucleoprotein complex

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https://api.crossref.org/works/10.1016%2FS0079-6603%2803%2901002-X

7 January 2021

based on heuristic

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Enhancement of bacterial gene expression by insertion elements or by mutation in a CAP-cAMP binding site.

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Insertion of DNA activates the cryptic bgl operon in E. coli K12

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7 January 2021

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Transcriptional activation of the Escherichia coli bgl operon: negative regulation by DNA structural elements near the promoter.

1 reference

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7 January 2021

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Characterization of the negative elements involved in silencing the bgl operon of Escherichia coli: possible roles for DNA gyrase, H-NS, and CRP-cAMP in regulation.

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ANALYSIS OF UNLINKED SUPPRESSORS OF AN O degrees MUTATION IN SALMONELLA

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7 January 2021

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Suppression of promoter mutations by the pleiotropic supx mutations.

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https://api.crossref.org/works/10.1016%2FS0079-6603%2803%2901002-X

7 January 2021

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The Escherichia coli supX locus is topA, the structural gene for DNA topoisomerase I.

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https://api.crossref.org/works/10.1016%2FS0079-6603%2803%2901002-X

7 January 2021

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Transcription generates positively and negatively supercoiled domains in the template.

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7 January 2021

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Transcription-driven supercoiling of DNA: direct biochemical evidence from in vitro studies

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Template supercoiling during ATP-dependent DNA helix tracking: studies with simian virus 40 large tumor antigen

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ATP-dependent partitioning of the DNA template into supercoiled domains by Escherichia coli UvrAB

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Supercoiling of the DNA template during transcription

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Transcription-dependent DNA supercoiling in yeast DNA topoisomerase mutants

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Supercoiling of intracellular DNA can occur in eukaryotic cells.

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7 January 2021

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Local domains of supercoiling activate a eukaryotic promoter in vivo

1 reference

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7 January 2021

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Local DNA topology and gene expression: the case of the leu-500 promoter

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2803%2901002-X

7 January 2021

based on heuristic

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Activity of a plasmid-borne leu-500 promoter depends on the transcription and translation of an adjacent gene

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2803%2901002-X

7 January 2021

based on heuristic

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Activation of the leu-500 promoter: a topological domain generated by divergent transcription in a plasmid.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2803%2901002-X

7 January 2021

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Topological promoter coupling in Escherichia coli: delta topA-dependent activation of the leu-500 promoter on a plasmid

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2803%2901002-X

7 January 2021

based on heuristic

inferred from DOI database lookup

Activation of the leu-500 promoter by adjacent transcription

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https://api.crossref.org/works/10.1016%2FS0079-6603%2803%2901002-X

7 January 2021

based on heuristic

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Long-distance effect of downstream transcription on activity of the supercoiling-sensitive leu-500 promoter in a topA mutant of Salmonella typhimurium

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2803%2901002-X

7 January 2021

based on heuristic

inferred from DOI database lookup

DNA supercoiling and transcription: topological coupling of promoters.

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https://api.crossref.org/works/10.1016%2FS0079-6603%2803%2901002-X

7 January 2021

based on heuristic

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Activation and silencing of leu-500 promoter by transcription-induced DNA supercoiling in the Salmonella chromosome.

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https://api.crossref.org/works/10.1016%2FS0079-6603%2803%2901002-X

7 January 2021

based on heuristic

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Long-range interaction between two promoters: activation of the leu-500 promoter by a distant upstream promoter.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2803%2901002-X

7 January 2021

based on heuristic

inferred from DOI database lookup

Suppression of leu-500 mutation in topA+ Salmonella typhimurium strains. The promoter relay at work.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2803%2901002-X

7 January 2021

based on heuristic

inferred from DOI database lookup

Organization of Lrp-binding sites upstream of ilvIH in Salmonella typhimurium.

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https://api.crossref.org/works/10.1016%2FS0079-6603%2803%2901002-X

7 January 2021

based on heuristic

inferred from DOI database lookup

A large family of bacterial activator proteins

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https://api.crossref.org/works/10.1016%2FS0079-6603%2803%2901002-X

7 January 2021

based on heuristic

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High A + T content conserved in DNA sequences upstream of leuABCD in Escherichia coli and Salmonella typhimurium

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https://api.crossref.org/works/10.1016%2FS0079-6603%2803%2901002-X

7 January 2021

based on heuristic

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A promoter relay mechanism for sequential gene activation

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https://api.crossref.org/works/10.1016%2FS0079-6603%2803%2901002-X

7 January 2021

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E. coli RNA polymerase interacts homologously with two different promoters

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https://api.crossref.org/works/10.1016%2FS0079-6603%2803%2901002-X

7 January 2021

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Mapping of single-stranded regions in duplex DNA at the sequence level: single-strand-specific cytosine methylation in RNA polymerase-promoter complexes

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7 January 2021

based on heuristic

inferred from DOI database lookup

A 72-base pair AT-rich DNA sequence element functions as a bacterial gene silencer.

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https://api.crossref.org/works/10.1016%2FS0079-6603%2803%2901002-X

7 January 2021

based on heuristic

inferred from DOI database lookup

Transcription-driven DNA supercoiling and gene expression control

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https://api.crossref.org/works/10.1016%2FS0079-6603%2803%2901002-X

7 January 2021

based on heuristic

inferred from DOI database lookup

In vitro transcription from the Escherichia coli ilvIH promoter

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2803%2901002-X

7 January 2021

based on heuristic

inferred from DOI database lookup

Effects of nutrition and growth rate on Lrp levels in Escherichia coli

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2803%2901002-X

7 January 2021

based on heuristic

inferred from DOI database lookup

Inorganic polyphosphate regulates responses of Escherichia coli to nutritional stringencies, environmental stresses and survival in the stationary phase

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2803%2901002-X

7 January 2021

based on heuristic

inferred from DOI database lookup

ppGpp-dependent leuO expression in bacteria under stress.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2803%2901002-X

7 January 2021

based on heuristic

inferred from DOI database lookup

Inorganic polyphosphate and the induction of rpoS expression

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2803%2901002-X

7 January 2021

based on heuristic

inferred from DOI database lookup

LeuO expression in response to starvation for branched-chain amino acids

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2803%2901002-X

7 January 2021

based on heuristic

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The ilvIH operon of Escherichia coli is positively regulated

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2803%2901002-X

7 January 2021

based on heuristic

inferred from DOI database lookup

Absence of acetohydroxy acid synthase III in Salmonella typhimurium is due to early termination of translation within the ilvl gene.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2803%2901002-X

7 January 2021

based on heuristic

inferred from DOI database lookup

The LysR-like regulator LeuO in Escherichia coli is involved in the translational regulation of rpoS by affecting the expression of the small regulatory DsrA-RNA

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2803%2901002-X

7 January 2021

based on heuristic

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Signal transduction cascade for regulation of RpoS: temperature regulation of DsrA

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2803%2901002-X

7 January 2021

based on heuristic

inferred from DOI database lookup

Effects of multicopy LeuO on the expression of the acid-inducible lysine decarboxylase gene in Escherichia coli

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2803%2901002-X

7 January 2021

based on heuristic

inferred from DOI database lookup

DNA supercoiling-dependent transcriptional coupling between the divergently transcribed promoters of the ilvYC operon of Escherichia coli is proportional to promoter strengths and transcript lengths

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2803%2901002-X

7 January 2021

based on heuristic

inferred from DOI database lookup

The effects of DNA supercoiling on the expression of operons of the ilv regulon of Escherichia coli suggest a physiological rationale for divergently transcribed operons

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2803%2901002-X

7 January 2021

based on heuristic

inferred from DOI database lookup

Transcriptional coupling between the divergent promoters of a prototypic LysR-type regulatory system, the ilvYC operon of Escherichia coli

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2803%2901002-X

7 January 2021

based on heuristic

inferred from DOI database lookup

Identification of two initiator elements in the bidirectional promoter of the human dihydrofolate reductase and mismatch repair protein 1 genes

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2803%2901002-X

7 January 2021

based on heuristic

inferred from DOI database lookup

The bidirectional promoter of the divergently transcribed mouse Surf-1 and Surf-2 genes

1 reference

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based on heuristic

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A strong candidate for the breast and ovarian cancer susceptibility gene BRCA1

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based on heuristic

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A novel gene encoding a B-box protein within the BRCA1 region at 17q21.1.

1 reference

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based on heuristic

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Potent stimulation of transcription-coupled DNA supercoiling by sequence-specific DNA-binding proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2803%2901002-X

7 January 2021

based on heuristic

inferred from DOI database lookup

The leuO gene product has a latent ability to relieve bgl silencing in Escherichia coli

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2803%2901002-X

7 January 2021

based on heuristic

inferred from DOI database lookup

Escherichia coli and Salmonella typhimurium supX genes specify deoxyribonucleic acid topoisomerase I

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7 January 2021

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Identifiers

10.1016/S0079-6603(03)01002-X

1 reference

Europe PubMed Central

7 August 2017

1 reference

Europe PubMed Central

7 August 2017

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