Potent stimulation of transcription-coupled DNA supercoiling by sequence-specific DNA-binding proteins (Q34033899)

30 July 2017

Potent stimulation of transcription-coupled DNA supercoiling by sequence-specific DNA-binding proteins (English)

1 reference

30 July 2017

Fenfei Leng

1

1 reference

PubMed ID

12093906

30 July 2017

Roger McMacken

series ordinal

2

1 reference

PubMed ID

12093906

30 July 2017

language of work or name

English

0 references

publication date

1 July 2002

1 reference

Proceedings of the National Academy of Sciences of the United States of America

30 July 2017

1 reference

30 July 2017

99

1 reference

30 July 2017

14

1 reference

30 July 2017

9139-9144

1 reference

Generation of superhelical torsion by ATP-dependent chromatin remodeling activities

30 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123107

Escherichia coli DNA topoisomerase I inhibits R-loop formation by relaxing transcription-induced negative supercoiling.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123107

DNA supercoiling and transcription: topological coupling of promoters.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123107

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123107

Hypernegative supercoiling of the DNA template during transcription elongation in vitro.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123107

Transcription and DNA supercoiling

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123107

Protein tracking-induced supercoiling of DNA: a tool to regulate DNA transactions in vivo?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123107

Construction of improved M13 vectors using oligodeoxynucleotide-directed mutagenesis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123107

Positively supercoiled plasmid DNA is produced by treatment ofEscherichia coliwith DNA gyrase inhibitors

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123107

The pUC plasmids, an M13mp7-derived system for insertion mutagenesis and sequencing with synthetic universal primers

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123107

lac repressor forms loops with linear DNA carrying two suitably spaced lac operators

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123107

Interaction of spatially separated protein-DNA complexes for control of gene expression: operator conversions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123107

Topoisomerase I mutants: the gene on pBR322 that encodes resistance to tetracycline affects plasmid DNA supercoiling

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123107

Transcription induces gyration of the DNA template in Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123107

Transcription generates positively and negatively supercoiled domains in the template.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123107

Curved helix segments can uniquely orient the topology of supertwisted DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123107

Supercoiling of the DNA template during transcription

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123107

DNA supercoiling and prokaryotic transcription

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123107

Reconstitution of a nine-protein system that initiates bacteriophage lambda DNA replication.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123107

Transcriptional activation of bacteriophage lambda DNA replication in vitro: regulatory role of histone-like protein HU of Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123107

Use of Mono Q high-resolution ion-exchange chromatography to obtain highly pure and active Escherichia coli RNA polymerase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123107

DNA looping in cellular repression of transcription of the galactose operon

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123107

Rapid and simple purification of T7 RNA polymerase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123107

The apical localization of transcribing RNA polymerases on supercoiled DNA prevents their rotation around the template

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123107

E. coli DNA binding protein HU forms nucleosome-like structure with circular double-stranded DNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123107

DNA supercoiling in Escherichia coli is under tight and subtle homeostatic control, involving gene-expression and metabolic regulation of both topoisomerase I and DNA gyrase.

5 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.142002099

Activation and repression of transcription initiation by a distant DNA structural transition

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.142002099

Ordered assembly of nucleoprotein structures at the bacteriophage lambda replication origin during the initiation of DNA replication.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=123107

Roles of topoisomerases in maintaining steady-state DNA supercoiling in Escherichia coli

29 October 2018

1 reference

12 December 2020

DNA looping induced by bacteriophage lambda O protein: implications for formation of higher order structures at the lambda origin of replication

1 reference

12 December 2020

The negative charge of Glu-111 is required to activate the cleavage center of EcoRI endonuclease

1 reference

12 December 2020

DNA looping alters local DNA conformation during transcription

1 reference

12 December 2020

Daughter origins can be held together by O protein in phage lambda replicative intermediates

1 reference

12 December 2020

Direct evidence for the effect of transcription on local DNA supercoiling in vivo

1 reference

12 December 2020

Kinetic characterization of the ATPase cycle of the DnaK molecular chaperone

1 reference

12 December 2020

Role of HU and DNA supercoiling in transcription repression: specialized nucleoprotein repression complex at gal promoters in Escherichia coli

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.142002099

1 reference

30 July 2017

0 references

1 reference

30 July 2017

1 reference

PubMed ID

12093906