Integrated transcriptome catalogue and organ-specific profiling of gene expression in fertile garlic (Allium sativum L.). (Q35017642)

5 August 2017

Integrated transcriptome catalogue and organ-specific profiling of gene expression in fertile garlic (Allium sativum L.). (English)

1 reference

5 August 2017

Garlic (allium sativum)

0 references

0 references

1 reference

Rina Kamenetsky

1

1 reference

5 August 2017

Adi Faigenboim

2

1 reference

5 August 2017

Einat Shemesh Mayer

3

1 reference

5 August 2017

Tomer Ben Michael

4

1 reference

5 August 2017

Chen Gershberg

5

1 reference

5 August 2017

Sagie Kimhi

6

1 reference

5 August 2017

Itzhak Esquira

7

1 reference

5 August 2017

Sarit Rohkin Shalom

8

1 reference

5 August 2017

Dani Eshel

9

1 reference

5 August 2017

Haim D Rabinowitch

10

1 reference

5 August 2017

Amir Sherman

11

1 reference

5 August 2017

language of work or name

English

0 references

publication date

22 January 2015

1 reference

5 August 2017

1 reference

5 August 2017

16

1 reference

5 August 2017

12

1 reference

Creative Commons Attribution 4.0 International

5 August 2017

start time

22 January 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

High-resolution transcriptome analysis with long-read RNA sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307630

Single-nucleotide polymorphism markers from de-novo assembly of the pomegranate transcriptome reveal germplasm genetic diversity

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307630

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307630

Turned on by heat: differential expression of FT and LFY-like genes in Narcissus tazetta during floral transition

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307630

Transcriptome sequencing to produce SNP-based genetic maps of onion

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307630

Generation and analysis of expressed sequence tags in the extreme large genomes Lilium and Tulipa

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307630

De novo assembly and characterization of the garlic (Allium sativum) bud transcriptome by Illumina sequencing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307630

Fast gapped-read alignment with Bowtie 2

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307630

SNP markers retrieval for a non-model species: a practical approach.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307630

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307630

REVIGO summarizes and visualizes long lists of gene ontology terms

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307630

De novo assembly of expressed transcripts and global analysis of the Phalaenopsis aphrodite transcriptome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307630

Angiosperm diversification through time

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307630

Full-length transcriptome assembly from RNA-Seq data without a reference genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307630

From the model to the crop: genes controlling tuber formation in potato

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307630

Regulation of flowering in rice: two florigen genes, a complex gene network, and natural variation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307630

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307630

Genome-scale analysis and comparison of gene expression profiles in developing and germinated pollen in Oryza sativa

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307630

A two-step process controls the formation of the bienzyme cysteine synthase complex

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307630

RNA-Seq gene expression estimation with read mapping uncertainty

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307630

A dynamic gene expression atlas covering the entire life cycle of rice.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307630

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307630

The Sequence Alignment/Map format and SAMtools

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307630

The flowering hormone florigen functions as a general systemic regulator of growth and termination

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307630

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307630

The rules of gene expression in plants: organ identity and gene body methylation are key factors for regulation of gene expression in Arabidopsis thaliana

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307630

Reproductive development and phenotypic differences in garlic are associated with expression and splicing of LEAFY homologue gaLFY.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307630

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307630

Biosynthesis of the flavour precursors of onion and garlic

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307630

Arabidopsis, the Rosetta stone of flowering time?

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307630

Basic local alignment search tool

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307630

Unlocking variability: inherent variation and developmental traits of garlic plants originated from sexual reproduction.

8 July 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1212-2

Male gametogenesis and sterility in garlic (Allium sativum L.): barriers on the way to fertilization and seed production

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1212-2

Flower development in garlic: the ups and downs of gaLFY expression.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1212-2

Evolution of genome size across some cultivated Allium species

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1212-2

Fuelling genetic and metabolic exploration of C 3 bioenergy crops through the first reference transcriptome of Arundo donax L.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1212-2

Rice expression atlas in reproductive development

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1212-2

FLOWERING LOCUS T genes control onion bulb formation and flowering.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307630

An integrated transcriptome atlas of the crop model Glycine max, and its use in comparative analyses in plants

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307630

Conservation of Arabidopsis thaliana Photoperiodic Flowering Time Genes in Onion (Allium cepa L.)

25 October 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1212-2

Transcriptome analysis of tree peony during chilling requirement fulfillment: assembling, annotation and markers discovering

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25609311

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Genotypic variation in sulfur assimilation and metabolism of onion (Allium cepa L.) III. Characterization of sulfite reductase

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25609311

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S12864-015-1212-2

1 reference

5 August 2017

1 reference

5 August 2017

1 reference