A novel member of the RNase D exoribonuclease family functions in mitochondrial guide RNA metabolism in Trypanosoma brucei (Q34695701)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21252235%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

title

A novel member of the RNase D exoribonuclease family functions in mitochondrial guide RNA metabolism in Trypanosoma brucei (English)

1 reference

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20 January 2020

0 references

1 reference

6 February 2019

1

1 reference

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20 January 2020

author name string

Sarah M McEvoy

2

1 reference

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20 January 2020

Jun Li

3

1 reference

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20 January 2020

Jun Qu

4

1 reference

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20 January 2020

Laurie K Read

5

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20 January 2020

language of work or name

English

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publication date

20 January 2011

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Journal of Biological Chemistry

20 January 2020

published in

1 reference

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20 January 2020

volume

286

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20 January 2020

page(s)

10329-10340

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20 January 2020

issue

12

1 reference

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TbPRMT6 is a type I protein arginine methyltransferase that contributes to cytokinesis in Trypanosoma brucei

20 January 2020

cites work

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Uridylation of mature miRNAs and siRNAs by the MUT68 nucleotidyltransferase promotes their degradation in Chlamydomonas.

7 July 2018

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RNA turnover in human mitochondria: more questions than answers?

7 July 2018

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RET1-catalyzed uridylylation shapes the mitochondrial transcriptome in Trypanosoma brucei

7 July 2018

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A protein-protein interaction map of trypanosome ~20S editosomes.

7 July 2018

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TRAMP complex enhances RNA degradation by the nuclear exosome component Rrp6

7 July 2018

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Examination of post-transcriptional regulations in prokaryotes by integrative biology.

7 July 2018

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Recognition of adenosine residues by the active site of poly(A)-specific ribonuclease

7 July 2018

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REH2 RNA helicase in kinetoplastid mitochondria: ribonucleoprotein complexes and essential motifs for unwinding and guide RNA (gRNA) binding

7 July 2018

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Polyadenylation-assisted RNA degradation processes in plants

7 July 2018

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Evidence for a degradosome-like complex in the mitochondria of Trypanosoma brucei

7 July 2018

1 reference

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Exosome complex and pervasive transcription in eukaryotic genomes

7 July 2018

1 reference

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Novel TUTase associates with an editosome-like complex in mitochondria of Trypanosoma brucei

7 July 2018

1 reference

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Uridine insertion/deletion RNA editing in trypanosomatid mitochondria: In search of the editosome

7 July 2018

1 reference

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Decapping is preceded by 3' uridylation in a novel pathway of bulk mRNA turnover

7 July 2018

1 reference

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Origins and activities of the eukaryotic exosome.

7 July 2018

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A straightforward and highly efficient precipitation/on-pellet digestion procedure coupled with a long gradient nano-LC separation and Orbitrap mass spectrometry for label-free expression profiling of the swine heart mitochondrial proteome

7 July 2018

1 reference

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Role of plant RNA-binding proteins in development, stress response and genome organization.

7 July 2018

1 reference

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Pre-mRNA processing reaches back to transcription and ahead to translation

7 July 2018

1 reference

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RNA polyadenylation and decay in mitochondria and chloroplasts

7 July 2018

1 reference

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RNA degradation in Archaea and Gram-negative bacteria different from Escherichia coli

7 July 2018

1 reference

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Poly(A)-assisted RNA decay and modulators of RNA stability

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060487

Kinetoplastid RNA editing involves a 3' nucleotidyl phosphatase activity

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060487

A comprehensive analysis of Trypanosoma brucei mitochondrial proteome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060487

The MRB1 complex functions in kinetoplastid RNA processing.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060487

Guide RNA-binding complex from mitochondria of trypanosomatids

7 July 2018

1 reference

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Evidence for core exosome independent function of the nuclear exoribonuclease Rrp6p

7 July 2018

1 reference

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Degradation of microRNAs by a family of exoribonucleases in Arabidopsis

7 July 2018

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TbRGG2, an essential RNA editing accessory factor in two Trypanosoma brucei life cycle stages

7 July 2018

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Determinants of microRNA processing inhibition by the developmentally regulated RNA-binding protein Lin28.

7 July 2018

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3' adenylation determines mRNA abundance and monitors completion of RNA editing in T. brucei mitochondria

7 July 2018

1 reference

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Kinetoplastids: related protozoan pathogens, different diseases

7 July 2018

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TbRGG1, an essential protein involved in kinetoplastid RNA metabolism that is associated with a novel multiprotein complex.

7 July 2018

1 reference

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Degradation of a polyadenylated rRNA maturation by-product involves one of the three RRP6-like proteins in Arabidopsis thaliana

7 July 2018

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Developmental regulation of gene expression in trypanosomatid parasitic protozoa

7 July 2018

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Degradation of histone mRNA requires oligouridylation followed by decapping and simultaneous degradation of the mRNA both 5' to 3' and 3' to 5'

7 July 2018

1 reference

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Mitochondrial complexes in Trypanosoma brucei: a novel complex and a unique oxidoreductase complex

7 July 2018

1 reference

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Roles for TbDSS-1 in RNA surveillance and decay of maturation by-products from the 12S rRNA locus

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060487

Trypanosome MTR4 is involved in rRNA processing

7 July 2018

1 reference

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In vitro reconstitution and characterization of the yeast mitochondrial degradosome complex unravels tight functional interdependence.

7 July 2018

1 reference

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Targeted depletion of a mitochondrial nucleotidyltransferase suggests the presence of multiple enzymes that polymerize mRNA 3' tails in Trypanosoma brucei mitochondria

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060487

The PNPase, exosome and RNA helicases as the building components of evolutionarily-conserved RNA degradation machines

7 July 2018

1 reference

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The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.

7 July 2018

1 reference

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Locating proteins in the cell using TargetP, SignalP and related tools

7 July 2018

1 reference

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Depletion of the yeast nuclear exosome subunit Rrp6 results in accumulation of polyadenylated RNAs in a discrete domain within the nucleolus

7 July 2018

1 reference

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Evidence for U-tail stabilization of gRNA/mRNA interactions in kinetoplastid RNA editing

7 July 2018

1 reference

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The subcellular localisation of trypanosome RRP6 and its association with the exosome

7 July 2018

1 reference

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Characterization of protein kinase CK2 from Trypanosoma brucei.

7 July 2018

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RNA polyadenylation and degradation in different Archaea; roles of the exosome and RNase R

7 July 2018

1 reference

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Structure/function mapping of amino acids in the N-terminal zinc finger of the human immunodeficiency virus type 1 nucleocapsid protein: residues responsible for nucleic acid helix destabilizing activity

7 July 2018

1 reference

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Interactions of mRNAs and gRNAs involved in trypanosome mitochondrial RNA editing: structure probing of a gRNA bound to its cognate mRNA.

7 July 2018

1 reference

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Compositionally and functionally distinct editosomes in Trypanosoma brucei

7 July 2018

1 reference

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Differential distribution of exosome subunits at the nuclear lamina and in cytoplasmic foci.

7 July 2018

1 reference

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Highly efficient tandem affinity purification of trypanosome protein complexes based on a novel epitope combination

7 July 2018

1 reference

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An essential RNase III insertion editing endonuclease in Trypanosoma brucei.

7 July 2018

1 reference

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Crystal structure of Escherichia coli RNase D, an exoribonuclease involved in structured RNA processing.

7 July 2018

1 reference

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Opposing effects of polyadenylation on the stability of edited and unedited mitochondrial RNAs in Trypanosoma brucei

7 July 2018

1 reference

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Complex management: RNA editing in trypanosomes

7 July 2018

1 reference

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Reconstitution of uridine-deletion precleaved RNA editing with two recombinant enzymes.

7 July 2018

1 reference

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Cold shock and regulation of surface protein trafficking convey sensitization to inducers of stage differentiation in Trypanosoma brucei

7 July 2018

1 reference

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RNA interference analyses suggest a transcript-specific regulatory role for mitochondrial RNA-binding proteins MRP1 and MRP2 in RNA editing and other RNA processing in Trypanosoma brucei

7 July 2018

1 reference

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TbDSS-1, an essential Trypanosoma brucei exoribonuclease homolog that has pleiotropic effects on mitochondrial RNA metabolism

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060487

A role for the exosome in the in vivo degradation of unstable mRNAs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060487

Contribution of domain structure to the RNA 3' end processing and degradation functions of the nuclear exosome subunit Rrp6p

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060487

tRNAs in Trypanosoma brucei: genomic organization, expression, and mitochondrial import

7 July 2018

1 reference

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Exoribonuclease superfamilies: structural analysis and phylogenetic distribution

7 July 2018

1 reference

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RNA editing in Trypanosoma brucei: characterization of gRNA U-tail interactions with partially edited mRNA substrates

7 July 2018

1 reference

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Processing of polycistronic guide RNAs is associated with RNA editing complexes in Trypanosoma brucei

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060487

A tightly regulated inducible expression system for conditional gene knock-outs and dominant-negative genetics in Trypanosoma brucei

7 July 2018

1 reference

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Trypanosoma brucei RBP16 is a mitochondrial Y-box family protein with guide RNA binding activity

7 July 2018

1 reference

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Coordination of kRNA editing and polyadenylation in Trypanosoma brucei mitochondria: complete editing is not required for long poly(A) tract addition

7 July 2018

1 reference

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3' exoribonucleolytic trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060487

Purification of a functional enzymatic editing complex from Trypanosoma brucei mitochondria

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060487

The structure and replication of kinetoplast DNA

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060487

glh-1, a germ-line putative RNA helicase from Caenorhabditis, has four zinc fingers

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060487

Extensive editing of CR2 maxicircle transcripts of Trypanosoma brucei predicts a protein with homology to a subunit of NADH dehydrogenase

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060487

Molecular cloning and expression of a Leishmania major gene encoding a single-stranded DNA-binding protein containing nine "CCHC" zinc finger motifs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060487

Assembly of mitochondrial ribonucleoprotein complexes involves specific guide RNA (gRNA)-binding proteins and gRNA domains but does not require preedited mRNA.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060487

Multiple guide RNAs for identical editing of Trypanosoma brucei apocytochrome b mRNA have an unusual minicircle location and are developmentally regulated.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060487

Escherichia coli RNase D. Catalytic properties and substrate specificity

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060487

Developmental aspects of uridine addition within mitochondrial transcripts of Trypanosoma brucei

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060487

Apocytochrome b and other mitochondrial DNA sequences are differentially expressed during the life cycle of Trypanosoma brucei.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060487

The MURF3 gene of T. brucei contains multiple domains of extensive editing and is homologous to a subunit of NADH dehydrogenase

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060487

Trypanosoma equiperdum minicircles encode three distinct primary transcripts which exhibit guide RNA characteristics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060487

Extensive editing of both processed and preprocessed maxicircle CR6 transcripts in Trypanosoma brucei

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060487

Modification of Trypanosoma brucei mitochondrial rRNA by posttranscriptional 3' polyuridine tail formation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060487

Guide RNAs in kinetoplastid mitochondria have a nonencoded 3′ oligo(U) tail involved in recognition of the preedited region

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060487

Addition of uridines to edited RNAs in trypanosome mitochondria occurs independently of transcription

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060487

RNA editing involves indiscriminate U changes throughout precisely defined editing domains

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060487

Maxicircle CR1 transcripts of Trypanosoma brucei are edited and developmentally regulated and encode a putative iron-sulfur protein homologous to an NADH dehydrogenase subunit

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060487

Guide RNAs for transcripts with developmentally regulated RNA editing are present in both life cycle stages of Trypanosoma brucei

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060487

Transcript-specific developmental regulation of polyadenylation in Trypanosoma brucei mitochondria

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060487

Developmental regulation of RNA editing and polyadenylation in four life cycle stages of Trypanosoma congolense.

7 July 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.152439

Polyadenylation regulates the stability of Trypanosoma brucei mitochondrial RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.152439

Uridylate-specific 3' 5'-exoribonucleases involved in uridylate-deletion RNA editing in trypanosomatid mitochondria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.152439

Kinetoplastid guide RNA biogenesis is dependent on subunits of the mitochondrial RNA binding complex 1 and mitochondrial RNA polymerase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.152439

Targeting of a tetracycline-inducible expression system to the transcriptionally silent minichromosomes of Trypanosoma brucei

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.152439

The recessive epigenetic swellmap mutation affects the expression of two step II splicing factors required for the transcription of the cell proliferation gene STRUWWELPETER and for the timing of cell cycle arrest in the Arabidopsis leaf.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.152439

Biphasic decay of guide RNAs in Trypanosoma brucei

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.152439

An RNA ligase essential for RNA editing and survival of the bloodstream form of Trypanosoma brucei

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.152439

New insights into the cellular organization of the RNA processing and degradation machinery of Escherichia coli.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060487

Molecular biology. A tail tale for U

26 October 2018

1 reference

12 December 2020

Nuclear RNA surveillance: no sign of substrates tailing off

1 reference

12 December 2020

RNA editing: transfer of genetic information from gRNA to precursor mRNA in vitro

1 reference

12 December 2020

Mitochondrial mRNA 3' cleavage/polyadenylation and RNA editing in Trypanosoma brucei are independent events

1 reference

12 December 2020

Identifiers

DOI

10.1074/JBC.M110.152439

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21252235%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21252235%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

1 reference