A cell-surface phylome for African trypanosomes (Q34654189)

3 August 2017

A cell-surface phylome for African trypanosomes (English)

1 reference

3 August 2017

0 references

Christiane Hertz-Fowler

5

object named as

Christiane Hertz-Fowler

0 references

Matthew Berriman

6

object named as

Matthew Berriman

1 reference

3 August 2017

Andrew P Jackson

1

0 references

Mark C. Field

object named as

Mark C Field

4

0 references

author name string

Harriet C Allison

2

1 reference

PubMed ID

23556014

3 August 2017

J David Barry

3

1 reference

PubMed ID

23556014

3 August 2017

language of work or name

English

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publication date

21 March 2013

1 reference

PLoS Neglected Tropical Diseases

3 August 2017

1 reference

3 August 2017

7

1 reference

3 August 2017

3

1 reference

3 August 2017

e2121

1 reference

Creative Commons Attribution 2.5 Generic

3 August 2017

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on focus list of Wikimedia project

ScienceSource

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New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

7 July 2018

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Genome-wide analysis of mRNA abundance in two life-cycle stages of Trypanosoma brucei and identification of splicing and polyadenylation sites

7 July 2018

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7 July 2018

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7 July 2018

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Antigenic variation in the African trypanosome: molecular mechanisms and phenotypic complexity

7 July 2018

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Fate of glycosylphosphatidylinositol (GPI)-less procyclin and characterization of sialylated non-GPI-anchored surface coat molecules of procyclic-form Trypanosoma brucei

7 July 2018

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Analysis of expressed sequence tags from the four main developmental stages of Trypanosoma congolense

7 July 2018

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A surface transporter family conveys the trypanosome differentiation signal

7 July 2018

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Telomeric expression sites are highly conserved in Trypanosoma brucei

7 July 2018

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A parasite cysteine protease is key to host protein degradation and iron acquisition

7 July 2018

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Isolation and analysis of the genetic diversity of repertoires of VSG expression site containing telomeres from Trypanosoma brucei gambiense, T. b. brucei and T. equiperdum.

7 July 2018

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Identification and molecular characterization of a novel stage-specific surface protein of Trypanosoma congolense epimastigotes

7 July 2018

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A haptoglobin-hemoglobin receptor conveys innate immunity to Trypanosoma brucei in humans

7 July 2018

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An improved general amino acid replacement matrix

7 July 2018

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Molecular and biochemical characterization of a cathepsin B-like protease family unique to Trypanosoma congolense

7 July 2018

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The TriTryp phosphatome: analysis of the protein phosphatase catalytic domains

7 July 2018

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FragAnchor: a large-scale predictor of glycosylphosphatidylinositol anchors in eukaryote protein sequences by qualitative scoring

7 July 2018

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Clustal W and Clustal X version 2.0

7 July 2018

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Analysis of the VSG gene silent archive in Trypanosoma brucei reveals that mosaic gene expression is prominent in antigenic variation and is favored by archive substructure

7 July 2018

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Functional genomics in Trypanosoma brucei: a collection of vectors for the expression of tagged proteins from endogenous and ectopic gene loci

7 July 2018

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Tandem gene arrays in Trypanosoma brucei: comparative phylogenomic analysis of duplicate sequence variation

7 July 2018

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Blood-brain barrier traversal by African trypanosomes requires calcium signaling induced by parasite cysteine protease

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

Trypanosoma congolense procyclins: unmasking cryptic major surface glycoproteins in procyclic forms

7 July 2018

1 reference

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A simple and robust statistical test for detecting the presence of recombination

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

A "holistic" kinesin phylogeny reveals new kinesin families and predicts protein functions.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

Concerted and birth-and-death evolution of multigene families

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

Comparative analysis of the kinomes of three pathogenic trypanosomatids: Leishmania major, Trypanosoma brucei and Trypanosoma cruzi

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

The Genome of the African Trypanosome Trypanosoma brucei

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

The Genome Sequence of Trypanosoma cruzi, Etiologic Agent of Chagas Disease

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

The molecular control of antigenic variation in Trypanosoma brucei

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

A cathepsin B-like protease is required for host protein degradation in Trypanosoma brucei

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

Improved prediction of signal peptides: SignalP 3.0

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

WebLogo: A Sequence Logo Generator

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

MrBayes 3: Bayesian phylogenetic inference under mixed models

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

Procyclin null mutants of Trypanosoma brucei express free glycosylphosphatidylinositols on their surface

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

The transferrin receptor of Trypanosoma brucei

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

Structural analysis of adenylate cyclases from Trypanosoma brucei in their monomeric state

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

The evolutionary fate and consequences of duplicate genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

Characterization of a novel alanine-rich protein located in surface microdomains in Trypanosoma brucei.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

Trypanosoma cruzi adenylyl cyclase is encoded by a complex multigene family

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

A tightly regulated inducible expression system for conditional gene knock-outs and dominant-negative genetics in Trypanosoma brucei

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

Expression and function of surface proteins in Trypanosoma brucei

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

Characterization of the ligand-binding site of the transferrin receptor in Trypanosoma brucei demonstrates a structural relationship with the N-terminal domain of the variant surface glycoprotein

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

The surface glycoconjugates of trypanosomatid parasites.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

Implications of conserved structural motifs in disparate trypanosome surface proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

Targeted disruption of expression site-associated gene-1 in bloodstream-form Trypanosoma brucei

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

The identification, purification, and characterization of two invariant surface glycoproteins located beneath the surface coat barrier of bloodstream forms of Trypanosoma brucei.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

A major surface antigen of procyclic stage Trypanosoma congolense

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

Simple methods for testing the molecular evolutionary clock hypothesis.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

A new VSG expression site-associated gene (ESAG) in the promoter region of Trypanosoma brucei encodes a protein with 10 potential transmembrane domains

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

A novel heterodimeric transferrin receptor encoded by a pair of VSG expression site-associated genes in T. brucei.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

Identification and characterization of an acidic major surface glycoprotein from procyclic stage Trypanosoma congolense.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

Putative genes of a variant-specific antigen gene transcription unit in Trypanosoma brucei

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

The genes and transcripts of an antigen gene expression site from T. brucei

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

Expression site associated genes of Trypanosoma brucei rhodesiense

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

An expression-site-associated gene family of trypanosomes is expressed in vivo and shows homology to a variant surface glycoprotein gene.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

A gene from the VSG expression site of Trypanosoma brucei encodes a protein with both leucine-rich repeats and a putative zinc finger

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

Differential expression of a family of putative adenylate/guanylate cyclase genes in Trypanosoma brucei.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

A transferrin-binding protein of Trypanosoma brucei is encoded by one of the genes in the variant surface glycoprotein gene expression site.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

A procyclin-associated gene in Trypanosoma brucei encodes a polypeptide related to ESAG 6 and 7 proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

The rise and fall of sleeping sickness

7 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0002121

Human African trypanosomiasis

21 January 2018

2 references

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0002121

21 January 2018

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605285

The architecture of variant surface glycoprotein gene expression sites in Trypanosoma brucei.

9 December 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0002121

What has DNA sequencing revealed about the VSG expression sites of African trypanosomes?

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0002121

Surface receptors and transporters of Trypanosoma brucei

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0002121

Expression and Function of the Trypanosoma brucei Major Surface Protease (GP63) Genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0002121

A hybrid micro-macroevolutionary approach to gene tree reconstruction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0002121

Molecular and functional characterization of the first nucleobase transporter gene from African trypanosomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0002121

Cloning, heterologous expression, and in situ characterization of the first high affinity nucleobase transporter from a protozoan

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0002121

A novel purine nucleoside transporter whose expression is up-regulated in the short stumpy form of the Trypanosoma brucei life cycle.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0002121

Functional expression of the catalytic domains of two cysteine proteinases from Trypanosoma congolense

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0002121

A family of stage-specific alanine-rich proteins on the surface of epimastigote forms of Trypanosoma brucei.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0002121

Characterisation of the loci encoding the glutamic acid and alanine rich protein of Trypanosoma congolense.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0002121

Glycosylphosphatidylinositol-anchored surface molecules of Trypanosoma congolense insect forms are developmentally regulated in the tsetse fly.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0002121

Families of adenylate cyclase genes in Trypanosoma brucei.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0002121

Bioinformatic insights to the ESAG5 and GRESAG5 gene families in kinetoplastid parasites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0002121

A family of putative receptor-adenylate cyclases from Leishmania donovani.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0002121

Cytokinesis of Trypanosoma brucei bloodstream forms depends on expression of adenylyl cyclases of the ESAG4 or ESAG4-like subfamily

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0002121

Differential regulation of nucleoside and nucleobase transporters in Crithidia fasciculata and Trypanosoma brucei brucei

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PNTD.0002121

The variant surface glycoprotein as a tool for adaptation in African trypanosomes

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23556014

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Origins of amino acid transporter loci in trypanosomatid parasites

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23556014

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Expression-site-associated-gene-8 (ESAG8) is not required for regulation of the VSG expression site in Trypanosoma brucei

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23556014

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PNTD.0002121

1 reference

3 August 2017

1 reference

3 August 2017

1 reference

PubMed ID

23556014