KaKs_Calculator 2.0: a toolkit incorporating gamma-series methods and sliding window strategies (Q33572322)

28 July 2017

KaKs_Calculator 2.0: a toolkit incorporating gamma-series methods and sliding window strategies (English)

1 reference

28 July 2017

Dapeng Wang

1

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28 July 2017

Yubin Zhang

2

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28 July 2017

Zhang Zhang

3

1 reference

28 July 2017

Jiang Zhu

4

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28 July 2017

Jun Yu

5

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28 July 2017

1 March 2010

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Genomics Proteomics and Bioinformatics

28 July 2017

1 reference

28 July 2017

8

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28 July 2017

1

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28 July 2017

77-80

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How do variable substitution rates influence Ka and Ks calculations?

28 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5054116

Gamma-MYN: a new algorithm for estimating Ka and Ks with consideration of variable substitution rates

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5054116

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5054116

WSPMaker: a web tool for calculating selection pressure in proteins and domains using window-sliding

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5054116

KaKs_Calculator: calculating Ka and Ks through model selection and model averaging

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5054116

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5054116

PAML 4: phylogenetic analysis by maximum likelihood

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5054116

Evaluation of six methods for estimating synonymous and nonsynonymous substitution rates

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5054116

HyPhy: hypothesis testing using phylogenies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5054116

Evidence of positively selected sites in mammalian alpha-defensins.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5054116

The Bioperl toolkit: Perl modules for the life sciences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5054116

Tas1r3, encoding a new candidate taste receptor, is allelic to the sweet responsiveness locus Sac.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5054116

Correlation between Ka/Ks and Ks is related to substitution model and evolutionary lineage.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5054116

SWAPSC: sliding window analysis procedure to detect selective constraints.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5054116

10.1016/S1672-0229(10)60008-3

31 October 2018

Identifiers

DOI

1 reference

28 July 2017

journals/gpb/WangZZZY10

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DBLP Dataset 2021-01-02

28 January 2021

1 reference

28 July 2017

1 reference