Flexible and scalable genotyping-by-sequencing strategies for population studies (Q34617139)

3 August 2017

title

Flexible and scalable genotyping-by-sequencing strategies for population studies (English)

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3 August 2017

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Christopher Heffelfinger

1

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3 August 2017

Christopher A Fragoso

2

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3 August 2017

Maria A Moreno

3

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3 August 2017

John D Overton

4

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3 August 2017

John P Mottinger

5

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3 August 2017

Hongyu Zhao

6

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3 August 2017

Joe Tohme

7

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3 August 2017

Stephen L Dellaporta

8

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3 August 2017

language of work or name

English

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publication date

18 November 2014

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3 August 2017

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3 August 2017

volume

15

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3 August 2017

page(s)

979

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TASSEL-GBS: a high capacity genotyping by sequencing analysis pipeline

3 August 2017

cites work

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7 July 2018

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An evaluation of genotyping by sequencing (GBS) to map the Breviaristatum-e (ari-e) locus in cultivated barley

7 July 2018

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7 July 2018

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High-resolution mapping of resistance to cassava mosaic geminiviruses in cassava using genotyping-by-sequencing and its implications for breeding

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach

7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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Genotype and SNP calling from next-generation sequencing data

7 July 2018

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7 July 2018

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7 July 2018

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Large scale loss of data in low-diversity illumina sequencing libraries can be recovered by deferred cluster calling

7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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A survey of sequence alignment algorithms for next-generation sequencing

7 July 2018

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Sequencing technologies - the next generation

7 July 2018

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The B73 Maize Genome: Complexity, Diversity, and Dynamics

7 July 2018

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7 July 2018

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Targeted capture and massively parallel sequencing of 12 human exomes

7 July 2018

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Methods for genomic partitioning

7 July 2018

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The Sequence Alignment/Map format and SAMtools

7 July 2018

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Mapping short DNA sequencing reads and calling variants using mapping quality scores

7 July 2018

1 reference

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SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries

7 July 2018

1 reference

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Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4253001

A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4253001

A comparison of bayesian methods for haplotype reconstruction from population genotype data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4253001

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica)

7 July 2018

1 reference

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Structure and function of type II restriction endonucleases

7 July 2018

1 reference

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Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.).

7 July 2018

1 reference

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7 July 2018

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DNA purification and isolation using a solid-phase

7 July 2018

1 reference

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Bridging the genotyping gap: using genotyping by sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations

7 July 2018

1 reference

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Next-generation sequencing data interpretation: enhancing reproducibility and accessibility

26 October 2018

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2b-RAD: a simple and flexible method for genome-wide genotyping

26 October 2018

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9 December 2018

Identifiers

DOI

10.1186/1471-2164-15-979

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3 August 2017

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3 August 2017

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